MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 144 to 193 of 12912 in total

Network Comparison Type  : Divided
Interaction Map  : High confidence
Filtered  : 1

Rank	description	Value Type	red	green	network_comparison
36	pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [swissprot;acc:q8te04]	Squared	106226	192141	1.80879
37	guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [swissprot;acc:p11488]	Measured	1836.76	907.763	2.02339
		Rooted	40.2805	24.3691	1.65293
	pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [swissprot;acc:q9bz23]	Squared	106226	192141	1.80879
	protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [refseq;acc:nm_033256]	Ranked	322	253	1.27273
38	guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [swissprot;acc:p19087]	Measured	1836.76	907.774	2.02337
		Rooted	40.2804	24.3692	1.65292
	microfibril-associated glycoprotein 4 precursor. [swissprot;acc:p55083]	Ranked	322	253	1.27273
	pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [swissprot;acc:q9h999]	Squared	106226	192141	1.80879
39	guanine nucleotide-binding protein g(i), alpha-2 subunit (adenylate cyclase-inhibiting g alpha protein). [swissprot;acc:p04899]	Measured	1836.8	907.903	2.02312
		Rooted	40.28	24.37	1.65285
	mitochondrial solute carrier protein. [refseq;acc:nm_145305]	Squared	106226	192141	1.80879
	protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [refseq;acc:nm_017726]	Ranked	322	253	1.27273
40	cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [refseq;acc:nm_052936]	Squared	144940	81169.7	1.78564
	ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [swissprot;acc:q15485]	Ranked	322	253	1.27273
	guanine nucleotide-binding protein g(i), alpha-1 subunit (adenylate cyclase-inhibiting g alpha protein). [swissprot;acc:p04898]	Measured	1836.81	907.978	2.02297
		Rooted	40.2797	24.3705	1.65281
41	guanine nucleotide-binding protein g(k), alpha subunit (g(i) alpha-3). [swissprot;acc:p08754]	Measured	1836.81	907.978	2.02297
		Rooted	40.2797	24.3705	1.65281
	microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [swissprot;acc:q9gzq8]	Squared	144912	81155	1.78562
	protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [refseq;acc:nm_030949]	Ranked	322	253	1.27273
42	guanine nucleotide-binding protein beta subunit 5 (transducin beta chain 5). [swissprot;acc:o14775]	Measured	1857.32	958.237	1.93827
		Rooted	40.225	24.7051	1.62821
	microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [swissprot;acc:q9h492]	Squared	144911	81154.7	1.78561
	proto-oncogene protein c-fos (cellular oncogene fos) (g0/g1 switch regulatory protein 7). [swissprot;acc:p01100]	Ranked	204.641	160.957	1.2714
43	cysteine endopeptidase aut-like isoform b. [refseq;acc:nm_178326]	Squared	144876	81136.5	1.78558
	guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [swissprot;acc:p04901]	Rooted	40.6302	25.4452	1.59677
	guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 3 (transducin beta chain 3). [swissprot;acc:p16520]	Measured	1881.02	1027.36	1.83093
	jun dimerization protein. [refseq;acc:nm_130469]	Ranked	204.641	160.957	1.2714
44	fos-related antigen 2. [swissprot;acc:p15408]			161.046	1.2707
	gaba(a) receptor-associated protein; gaba(a)-receptor-associated protein. [refseq;acc:nm_007278]	Squared	139741	78454.6	1.78117
	guanine nucleotide-binding protein beta subunit 4 (transducin beta chain 4). [swissprot;acc:q9hav0]	Rooted	40.5691	25.4263	1.59556
	guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [swissprot;acc:p04901]	Measured	1931.34	1057.39	1.82652
45	gaba-a receptor-associated protein. [sptrembl;acc:q9by60]	Squared	129597	73157.5	1.77148
	guanine nucleotide-binding protein beta subunit 4 (transducin beta chain 4). [swissprot;acc:q9hav0]	Measured	1926.69	1056.02	1.82448
	guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 3 (transducin beta chain 3). [swissprot;acc:p16520]	Rooted	40.081	25.1546	1.59339
	protein fosb (g0/g1 switch regulatory protein 3). [swissprot;acc:p53539]	Ranked	204.641	161.051	1.27066
46	apg3p; pc3-96 protein. [refseq;acc:nm_022488]	Squared	129597	73157.5	1.77148
	deltex 2. [refseq;acc:nm_020892]	Rooted	27.634	43.9629	1.5909
	fos-related antigen 1 (fra-1). [swissprot;acc:p15407]	Ranked	204.642	161.068	1.27053
	neurogenic differentiation factor 2 (neurod2). [swissprot;acc:q15784]	Measured	779.167	1390.33	1.78438
47	chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [swissprot;acc:q12873]
	deltex homolog 1; hdx-1. [refseq;acc:nm_004416]	Rooted	27.7078	44.017	1.58861
	gbp protein isoform a. [refseq;acc:nm_017870]	Ranked	325.586	256.492	1.26938
	ubiquitin activating enzyme e1-like protein. [refseq;acc:nm_006395]	Squared	98517.9	56927.2	1.73059
48	doc-1 related protein (doc-1r). [swissprot;acc:o75956]	Measured	779.167	1390.33	1.78438
	gaba(a) receptor-associated protein; gaba(a)-receptor-associated protein. [refseq;acc:nm_007278]	Ranked	65.4586	83.0461	1.26868
	lag1 longevity assurance homolog 2 isoform 1; l3 pigment; tumor metastasis-suppressor. [refseq;acc:nm_022075]	Squared	6300.2	10703.5	1.69891
	t-lak cell-originated protein kinase; spermatogenesis-related protein kinase; pdz-binding kinase; pbk; mapkk-like protein kinase; serine/threonine protein kinase. [refseq;acc:nm_018492]	Rooted	27.7254	44.0299	1.58807
49	associated molecule with the sh3 domain of stam (amsh) like protein. [refseq;acc:nm_020799]	Squared	28994.2	17134.8	1.69212

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.