Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the
value_type as 'ranked' since this provides a very robust analysis method.
intercation map as 'high confidence'
network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2675 to 2724 of 3228 in total
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2675\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [source:swissprot;acc:q9byn8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
214.893\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.108\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.001\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2676\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
enhancer of rudimentary homolog. [source:swissprot;acc:q14259]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2677\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat protein shoc-2 (ras-binding protein sur-8). [source:swissprot;acc:q9uq13]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
144.412\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.553\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00098\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2678\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 2 (ralgds-like factor) (ras-associated protein rab2l). [source:swissprot;acc:o15211]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
144.411\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.552\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2679\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
anaphase-promoting complex subunit 2; anaphase-promoting complex 2. [source:refseq;acc:nm\_013366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
190.142\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
189.959\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00096\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2680\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21/h-ras-1 (c-h-ras). [source:swissprot;acc:p01112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
144.422\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.56\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2681\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-specific protease otubain 2. [source:refseq;acc:nm\_023112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
203.592\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
203.787\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2682\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein n-ras. [source:swissprot;acc:p01111]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
144.427\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.564\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00095\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2683\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclease sensitive element binding protein 1 (y box binding protein-1) (y-box transcription factor) (yb-1) (ccaat-binding transcription factor i subunit a) (cbf-a) (enhancer factor i subunit a) (efi-a) (dna-binding protein b) (dbpb). [source:swissprot;acc:p16991]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
208.438\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
208.635\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2684\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-binding protein a (cold shock domain protein a) (single-strand dna binding protein nf-gmb). [source:swissprot;acc:p16989]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2685\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
germ cell specific y-box binding protein; contrin. [source:refseq;acc:nm\_015982]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2686\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
proteasome subunit beta type 7 precursor (ec 3.4.25.1) (proteasome subunit z) (macropain chain z) (multicatalytic endopeptidase complex chain z). [source:swissprot;acc:q99436]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
219.829\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.629\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00091\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2687\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, mitochondrial precursor (ec 2.6.1.42) (bcat(m)) (placental protein 18) (pp18). [source:swissprot;acc:o15382]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
210.939\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.755\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00087\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2688\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisomal 3,2-trans-enoyl-coa isomerase (ec 5.3.3.8) (dodecenoyl-coa delta-isomerase) (d3,d2-enoyl-coa isomerase) (dbi-related protein 1) (drs-1) (hepatocellular carcinoma-associated antigen 88). [source:swissprot;acc:o75521]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
194.557\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
194.392\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00085\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2689\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp-citrate synthase (ec 2.3.3.8) (atp-citrate (pro-s-)-lyase) (citrate cleavage enzyme). [source:swissprot;acc:p53396]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
213.792\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.619\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00081\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2690\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 4 (wch4) (mercurial-insensitive water channel) (miwc). [source:swissprot;acc:p55087]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.191\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.046\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00077\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2691\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.193\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
188.048\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2692\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 5. [source:swissprot;acc:p55064]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.192\vspace{3pt}}&&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2693\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.193\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.049\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2694\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.223\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.081\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00075\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2695\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 54 kda protein (srp54). [source:swissprot;acc:p13624]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.545\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.384\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2696\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
iron-responsive element binding protein 1 (ire-bp 1) (iron regulatory protein 1) (irp1) (ferritin repressor protein) (aconitate hydratase) (ec 4.2.1.3) (citrate hydro-lyase) (aconitase). [source:swissprot;acc:p21399]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
201.652\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.794\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0007\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2697\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
arp2/3 complex 34 kda subunit (p34-arc) (actin-related protein 2/3 complex subunit 2). [source:swissprot;acc:o15144]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
225.081\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.232\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00067\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2698\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
188.435\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
188.31\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00066\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2699\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2700\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&&&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2701\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase dcamkl1 (ec 2.7.1.-) (doublecortin- like and cam kinase-like 1). [source:swissprot;acc:o15075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.539\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.682\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2702\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
188.435\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
188.311\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2703\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2704\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2705\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calsyntenin-2 precursor. [source:swissprot;acc:q9h4d0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.457\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.334\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00065\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2706\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calsyntenin-3 precursor. [source:swissprot;acc:q9bqt9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
188.459\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.336\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2707\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
red cell acid phosphatase 1, isozyme f (ec 3.1.3.2) (acp1) (low molecular weight phosphotyrosine protein phosphatase) (ec 3.1.3.48) (adipocyte acid phosphatase, isozyme alpha). [source:swissprot;acc:p24666]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.096\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.232\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00063\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2708\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
porphobilinogen deaminase (ec 4.3.1.8) (hydroxymethylbilane synthase) (hmbs) (pre-uroporphyrinogen synthase) (pbg-d). [source:swissprot;acc:p08397]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
227.796\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0006\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2709\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
importin 7; ran-binding protein 7. [source:refseq;acc:nm\_006391]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
220.521\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.395\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00057\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2710\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
importin 8; ran-binding protein 8. [source:refseq;acc:nm\_006390]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2711\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
brefeldin a-inhibited guanine nucleotide-exchange protein 2 (brefeldin a-inhibited gep 2). [source:swissprot;acc:q9y6d5]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2712\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
hsgcn1 (fragment). [source:sptrembl;acc:q99736]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2713\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
brefeldin a-inhibited guanine nucleotide-exchange protein 1 (brefeldin a-inhibited gep 1) (p200 arf-gep1) (p200 arf guanine nucleotide exchange factor). [source:swissprot;acc:q9y6d6]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2714\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to trna synthetase class ii. [source:refseq;acc:nm\_152268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
220.224\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.348\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00056\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2715\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
basic proline-rich peptide p-e (ib-9). [source:swissprot;acc:p02811]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
216.018\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.903\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00053\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2716\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
salivary proline-rich protein po (allele k) [contains: peptide p-d] (fragment). [source:swissprot;acc:p10162]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2717\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-associated protein, rp/eb family, member 2; t-cell activation protein, eb1 family; apc-binding protein eb1. [source:refseq;acc:nm\_014268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.521\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.634\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00052\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2718\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
histidine-rich membrane protein ke4. [source:swissprot;acc:q92504]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
216.52\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
216.632\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2719\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-associated protein rp/eb family member 1 (apc-binding protein eb1). [source:swissprot;acc:q15691]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2720\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-associated protein rp/eb family member 3 (protein eb3). [source:swissprot;acc:q9upy8]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
216.633\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2721\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
bifunctional aminoacyl-trna synthetase [includes: glutamyl-trna synthetase (ec 6.1.1.17) (glutamate--trna ligase); prolyl-trna synthetase (ec 6.1.1.15) (proline--trna ligase)]. [source:swissprot;acc:p07814]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
221.022\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.116\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00043\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2722\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transducin beta-like 2 protein (ws beta-transducin repeats protein) (ws-betatrp) (williams-beuren syndrome chromosome region 13 protein). [source:swissprot;acc:q9y4p3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
219.308\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.214\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2723\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
lamin b2. [source:swissprot;acc:q03252]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
219.323\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.413\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00041\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2724\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heat shock protein hsp 90-beta (hsp 84) (hsp 90). [source:swissprot;acc:p08238]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
221.053\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.963\vspace{3pt}}&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/