MK5 Microarray Data

Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

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Showing element 2530 to 2579 of 25824 in total

Interaction Map	High confidence
Filtered	1

Rank	description	Value Type	Network Comparison Type	red	green	network_comparison	
317	dj756n5.1.1 (continues in em:al133324 as dj1161h23.3) (fragment). [source:sptrembl;acc:q9h430]	Rooted	Divided	95.0526	85.3206	1.11406	
317	glutamate decarboxylase, 67 kda isoform (ec 4.1.1.15) (gad-67) (67 kda glutamic acid decarboxylase). [source:swissprot;acc:q99259]	Rooted	Subtracted	59.6399	51.9242	7.7157	
317	melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]	Ranked	Subtracted	88.2482	110.265	22.0168	
317	nucleoside diphosphate kinase 3 (ec 2.7.4.6) (ndk 3) (ndp kinase 3) (nm23-h3) (dr-nm23). [source:swissprot;acc:q13232]	Squared	Divided	33982.3	43159.1	1.27005	
317	splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]	Ranked	Divided	224.445	204.044	1.09998	
317	vav-3 protein. [source:swissprot;acc:q9ukw4]	Measured	Subtracted	6647.43	7706.18	1058.75	
317	zinc finger homeobox protein 1b (smad interacting protein 1) (smadip1) (hrihfb2411). [source:swissprot;acc:o60315]	Squared	Subtracted	44848.2	52108.3	7260.1	
318	1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (ec 2.3.1.51) (1- agp acyltransferase 3) (1-agpat 3) (lysophosphatidic acid acyltransferase-gamma) (lpaat-gamma) (1-acylglycerol-3-phosphate o- acyltransferase 3). [source:swissprot;acc:q9nrz7]	Measured	Subtracted	7485.08	8543.66	1058.58	
318	chromatin accessibility complex protein 1 (chrac-1) (chrac-15) (huchrac15) (dna polymerase epsilon subunit p15). [source:swissprot;acc:q9nrg0]	Rooted	Subtracted	38.8223	46.4975	7.6752	
318	melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]	Ranked	Subtracted	88.2482	110.265	22.0168	
318	mitochondrial 60s ribosomal protein l3 (l3mt). [source:swissprot;acc:p09001]	Ranked	Divided	242.011	266.18	1.09987	
318	mitochondrial import receptor subunit tom20 homolog (mitochondrial 20 kda outer membrane protein) (outer mitochondrial membrane receptor tom20). [source:swissprot;acc:q15388]	Squared	Divided	46739.9	59134.5	1.26518	
318	myosin heavy chain, skeletal muscle, extraocular (myhc-eo). [source:swissprot;acc:q9ukx3]	Rooted	Divided	95.0526	85.3206	1.11406	
318	nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm_006333]	Measured	Divided	34190.9	40795.8	1.19318	
318	transcription factor 8 (nil-2-a zinc finger protein) (negative regulator of il2). [source:swissprot;acc:p37275]	Squared	Subtracted	44848.2	52108.3	7260.1	
319	1-acyl-sn-glycerol-3-phosphate acyltransferase delta (ec 2.3.1.51) (1- agp acyltransferase 4) (1-agpat 4) (lysophosphatidic acid acyltransferase-delta) (lpaat-delta) (1-acylglycerol-3-phosphate o- acyltransferase 4). [source:swissprot;acc:q9nrz5]	Measured	Subtracted	7477	8532.02	1055.02	
319	60s ribosomal protein l19. [source:swissprot;acc:p14118]	Ranked	Divided	240.73	264.729	1.09969	
319	b9 protein; likely ortholog of mouse endothelial precursor protein b9. [source:refseq;acc:nm_015681]	Rooted	Subtracted	53.4993	45.9227	7.5766	
319	maguk p55 subfamily member 3 (mpp3 protein) (discs, large homolog 3). [source:swissprot;acc:q13368]	Squared	Subtracted	37147.5	44372.1	7224.6	
319	melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]	Ranked	Subtracted	88.2482	110.265	22.0168	
319	peroxisomal farnesylated protein (33 kda housekeeping protein) (peroxin 19). [source:swissprot;acc:p40855]	Squared	Divided	46739.9	59134.5	1.26518	
319	ras-related gtp binding a; ras-related gtp-binding protein. [source:refseq;acc:nm_006570]	Measured	Divided	20911	24908.5	1.19117	
319	saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm_016101]	Rooted	Divided	49.0663	54.4978	1.1107	
320	40s ribosomal protein s29. [source:swissprot;acc:p30054]	Rooted	Divided	50.2784	45.294	1.11005	
320	carboxypeptidase b precursor. [source:refseq;acc:nm_020361]	Rooted	Subtracted	77.5801	70.0182	7.5619	
320	coatomer alpha subunit (alpha-coat protein) (alpha-cop) (hepcop) (hep-cop) [contains: xenin (xenopsin-related peptide); proxenin]. [source:swissprot;acc:p53621]	Squared	Subtracted	49280.5	42272.7	7007.8	
320	epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]	Ranked	Divided	241.892	265.96	1.0995	
320	epoxide hydrolase 1 (ec 3.3.2.3) (microsomal epoxide hydrolase) (epoxide hydratase). [source:swissprot;acc:p07099]	Squared	Divided	87971.9	69563.1	1.26463	
320	melanoma-associated antigen d2 (mage-d2 antigen) (breast cancer associated gene 1 protein) (bcg-1) (11b6) (hepatocellular carcinoma associated protein jcl-1). [source:swissprot;acc:q9unf1]	Ranked	Subtracted	88.2482	110.265	22.0168	
320	ras-related gtp binding c; rag c protein. [source:refseq;acc:nm_022157]	Measured	Divided	20911	24908.5	1.19117	
320	steroid hormone receptor err2 (estrogen-related receptor, beta) (err-beta) (estrogen receptor-like 2) (err beta-2). [source:swissprot;acc:o95718]	Measured	Subtracted	10263.8	11318.6	1054.8	
321	c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]	Ranked	Divided	241.892	265.959	1.09949	
321	fibulin-1 precursor. [source:swissprot;acc:p23142]	Squared	Subtracted	44407.1	51387.4	6980.3	
321	mast cell carboxypeptidase a precursor (ec 3.4.17.1) (mc-cpa) (carboxypeptidase a3). [source:swissprot;acc:p15088]	Rooted	Subtracted	77.58	70.0181	7.5619	
321	putative nucleoside diphosphate kinase (ec 2.7.4.6) (ndk) (ndp kinase). [source:swissprot;acc:o60361]	Squared	Divided	33526	42390.2	1.2644	
321	ras-related gtp binding b short isoform; gtp-binding protein ragb. [source:refseq;acc:nm_006064]	Measured	Divided	20911	24908.5	1.19117	
321	signal transducing adaptor molecule 1; signal transducing adaptor molecule. [source:refseq;acc:nm_003473]	Measured	Subtracted	11797.1	10750.2	1046.9	
321	trophinin. [source:swissprot;acc:q12816]	Ranked	Subtracted	88.2482	110.265	22.0168	
321	u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]	Rooted	Divided	55.9231	62.0565	1.10968	
322	anillin, actin binding protein (scraps homolog, drosophila); anillin (drosophila scraps homolog), actin binding protein. [source:refseq;acc:nm_018685]	Measured	Divided	20911	24908.5	1.19117	
322	carboxypeptidase b precursor. [source:refseq;acc:nm_020361]	Squared	Subtracted	25326.4	18354.1	6972.3	
322	deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm_021233]	Ranked	Divided	86.7483	78.8995	1.09948	
322	nucleoside diphosphate kinase a (ec 2.7.4.6) (ndk a) (ndp kinase a) (tumor metastatic process-associated protein) (metastasis inhibition factor nm23) (nm23-h1). [source:swissprot;acc:p15531]	Squared	Divided	33522.8	42384.8	1.26436	
322	plasma carboxypeptidase b2 isoform a preproprotein; carboxypeptidase u; thrombin-activatable fibrinolysis inhibitor; carboxypeptidase b-like protein; thrombin-activable fibrinolysis inhibitor. [source:refseq;acc:nm_001872]	Rooted	Subtracted	77.5797	70.0179	7.5618	
322	pyruvate carboxylase, mitochondrial precursor (ec 6.4.1.1) (pyruvic carboxylase) (pcb). [source:swissprot;acc:p11498]	Measured	Subtracted	9304.83	10347.3	1042.47	
322	rgs19-interacting protein 1 (gaip c-terminus interacting protein gipc) (rgs-gaip interacting protein) (tax interaction protein 2) (tip-2). [source:swissprot;acc:o14908]	Rooted	Divided	60.594	67.2244	1.10942	
322	ribonucleoside-diphosphate reductase m2 chain (ec 1.17.4.1) (ribonucleotide reductase small chain). [source:swissprot;acc:p31350]	Ranked	Subtracted	231.969	210.064	21.905	
323	40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]	Ranked	Subtracted	242.238	264.11	21.872	
323	60s ribosomal protein l23a. [source:swissprot;acc:p29316]	Ranked	Divided	241.884	265.945	1.09947	
323	cholinephosphate cytidylyltransferase a (ec 2.7.7.15) (phosphorylcholine transferase a) (ctp:phosphocholine cytidylyltransferase a) (ct a) (cct a) (cct-alpha). [source:swissprot;acc:p49585]	Rooted	Divided	50.3803	45.4193	1.10923	

Legend:
- Rank is the rank after comparing the two networks
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.