Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 1513 to 1562 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1513\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
COX15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cox15 homolog isoform 2 precursor; cytochrome c oxidase subunit 15; cytochrome c oxidase assembly protein. [source:refseq;acc:nm\_004376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.268\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
209.509\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01794\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1514\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
COX10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protoheme ix farnesyltransferase, mitochondrial precursor (ec 2.5.1.-) (heme o synthase). [source:swissprot;acc:q12887]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1515\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPP10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dipeptidylpeptidase 10; dipeptidyl peptidase iv-related protein 3. [source:refseq;acc:nm\_020868]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.267\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
209.511\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01793\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1516\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPP6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dipeptidyl aminopeptidase-like protein 6 (dipeptidylpeptidase vi) (dipeptidylpeptidase 6) (dipeptidyl peptidase iv like protein) (dipeptidyl aminopeptidase-related protein) (dppx). [source:swissprot;acc:p42658]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1517\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
seprase (ec 3.4.21.-) (fibroblast activation protein alpha) (integral membrane serine protease) (170-kda melanoma membrane-bound gelatinase). [source:swissprot;acc:q12884]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCKDK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial precursor (ec 2.7.1.115) (branched-chain alpha-ketoacid dehydrogenase kinase) (bckdhkin) (bckd-kinase). [source:swissprot;acc:o14874]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.259\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.524\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01783\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cone-rod homeobox protein. [source:swissprot;acc:o43186]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.331\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.061\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01779\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OTX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein otx1. [source:swissprot;acc:p32242]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.367\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.098\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01778\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OTX2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein otx2. [source:swissprot;acc:p32243]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.478\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.212\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01776\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MPI\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannose-6-phosphate isomerase (ec 5.3.1.8) (phosphomannose isomerase) (pmi) (phosphohexomutase). [source:swissprot;acc:p34949]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
219.306\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
223.179\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01766\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative ankyrin-repeat containing protein. [source:refseq;acc:nm\_025185]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STARD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FAT2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protocadherin fat 2 precursor (hfat2) (multiple epidermal growth factor-like domains 1). [source:swissprot;acc:q9nyq8]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FAT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cadherin-related tumor suppressor homolog precursor (fat protein homolog). [source:swissprot;acc:q14517]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1527\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STARD3NL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mln64 n-terminal domain homolog (stard3 n-terminal like protein). [source:swissprot;acc:o95772]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1528\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FOXA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hepatocyte nuclear factor 3-gamma (hnf-3g) (forkhead box protein a3) (fork head-related protein fkh h3). [source:swissprot;acc:p55318]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.021\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01759\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1529\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACTG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
actin, cytoplasmic 2 (gamma-actin). [source:swissprot;acc:p02571]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.031\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01751\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1530\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MLLT4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
af-6 protein. [source:swissprot;acc:p55196]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.733\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01746\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1531\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRIM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cysteine-rich motor neuron 1; cysteine-rich repeat-containing protein s52 precursor. [source:refseq;acc:nm\_016441]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01744\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1532\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RBM10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rna-binding protein 10 (rna binding motif protein 10) (dxs8237e). [source:swissprot;acc:p98175]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
228.419\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
232.376\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01732\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1533\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYCS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytochrome c. [source:swissprot;acc:p00001]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1534\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HS6ST2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase 2. [source:refseq;acc:nm\_147174]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1535\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HS6ST1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase; heparan-sulfate 6-sulfotransferase. [source:refseq;acc:nm\_004807]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1536\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FA2H\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid hydroxylase domain containing 1. [source:refseq;acc:nm\_024306]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1537\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
WBP11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ww domain binding protein 11; npw38-binding protein npwbp; sh3 domain-binding protein snp70. [source:refseq;acc:nm\_016312]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1538\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ELAC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
elac homolog 2; putative prostate cancer susceptibility protein; elac (e. coli) homolog 2. [source:refseq;acc:nm\_018127]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1539\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RBM5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rna-binding protein 5 (rna binding motif protein 5) (putative tumor suppressor luca15) (g15 protein). [source:swissprot;acc:p52756]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1540\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATG5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.077\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.015\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01721\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1541\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MYB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myb proto-oncogene protein (c-myb). [source:swissprot;acc:p10242]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.672\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01714\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1542\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TMLHE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trimethyllysine dioxygenase, mitochondrial precursor (ec 1.14.11.8) (epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (tml-alpha- ketoglutarate dioxygenase) (tml hydroxylase) (tml dioxygenase) (tmld). [source:swissprot;acc:q9nvh6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.546\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
209.965\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01706\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1543\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ERAL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gtp-binding protein era homolog (hera) (fragment). [source:swissprot;acc:o75616]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1544\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NR2E1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
orphan nuclear receptor nr2e1 (nuclear receptor tlx) (tailless homolog) (tll) (htll). [source:swissprot;acc:q9y466]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.081\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01704\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1545\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NR2C1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
orphan nuclear receptor tr2. [source:swissprot;acc:p13056]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.083\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01702\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1546\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ASS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
argininosuccinate synthase (ec 6.3.4.5) (citrulline--aspartate ligase). [source:swissprot;acc:p00966]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.769\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.474\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01701\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1547\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MYBL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myb-related protein b (b-myb). [source:swissprot;acc:p10244]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.541\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.823\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01699\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1548\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MYBL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myb-related protein a (a-myb). [source:swissprot;acc:p10243]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.512\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.802\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01696\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1549\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DCTN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dynactin complex 50 kda subunit (50 kda dynein-associated polypeptide) (dynamitin) (dctn-50) (dynactin 2). [source:swissprot;acc:q13561]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
225.159\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
221.424\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01687\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1550\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1551\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, heart/skeletal muscle isoform t1 (adp/atp translocase 1) (adenine nucleotide translocator 1) (ant 1). [source:swissprot;acc:p12235]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1552\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, fibroblast isoform (adp/atp translocase 2) (adenine nucleotide translocator 2) (ant 2). [source:swissprot;acc:p05141]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1553\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AHCY\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenosylhomocysteinase (ec 3.3.1.1) (s-adenosyl-l-homocysteine hydrolase) (adohcyase). [source:swissprot;acc:p23526]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.389\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.833\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01679\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1554\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CTBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
c-terminal binding protein 1 (ctbp1). [source:swissprot;acc:q13363]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.018\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01656\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1555\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PASK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pas domain containing serine/threonine kinase; pas-serine/threonine kinase. [source:refseq;acc:nm\_015148]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
196.192\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
192.996\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1556\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCL6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
b-cell lymphoma 6 protein (bcl-6) (zinc finger protein 51) (laz-3 protein) (bcl-5). [source:swissprot;acc:p41182]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1557\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNAI2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [source:swissprot;acc:o43623]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1558\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CTBP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
c-terminal binding protein 2 (ctbp2). [source:swissprot;acc:p56545]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.171\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
192.977\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01655\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1559\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCL6B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
b-cell cll/lymphoma 6, member b (zinc finger protein); zinc finger protein 62. [source:refseq;acc:nm\_181844]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.191\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
192.996\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1560\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GATAD2A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
p66 alpha. [source:refseq;acc:nm\_017660]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
167.687\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
170.455\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01651\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1561\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GATAD2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription repressor p66 beta component of the mecp1 complex. [source:refseq;acc:nm\_020699]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1562\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosine aminotransferase (ec 2.6.1.5) (l-tyrosine:2-oxoglutarate aminotransferase) (tat). [source:swissprot;acc:p17735]\vspace{3pt}}&&&\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/