Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the
value_type as 'ranked' since this provides a very robust analysis method.
intercation map as 'high confidence'
network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Interaction Map Network Comparison Type Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2980 to 3029 of 14920 in total
Interaction Map: High confidence
Network Comparison Type: Divided

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{5}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
373\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
kynureninase (ec 3.7.1.3) (l-kynurenine hydrolase). [source:swissprot;acc:q16719]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2713.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2864.68\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05571\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase kinase kinase 5 (ec 2.7.1.-) (mapk/erk kinase kinase 5) (mek kinase 5) (mekk 5) (apoptosis signal- regulating kinase 1) (ask-1). [source:swissprot;acc:q99683]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
10598.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11061.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04371\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable serine protease htra3 precursor (ec 3.4.21.-). [source:swissprot;acc:p83110]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5066.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5926.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16955\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [source:refseq;acc:nm\_032260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
30.3054\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31.5389\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0407\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
sprouty homolog 4 (spry-4). [source:swissprot;acc:q9c004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
215.107\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192.635\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11666\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
374\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l26. [source:swissprot;acc:q02877]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.2549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.5599\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10305\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
adenine phosphoribosyltransferase (ec 2.4.2.7) (aprt). [source:swissprot;acc:p07741]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2323.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2452.23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05527\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
alanine aminotransferase (ec 2.6.1.2) (glutamic--pyruvic transaminase) (gpt) (glutamic--alanine transaminase). [source:swissprot;acc:p24298]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
2572.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2869.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11579\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
calcyphosine. [source:swissprot;acc:q13938]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
9874.54\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9478.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04183\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [source:refseq;acc:nm\_032260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
30.2858\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31.5117\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04048\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine protease htra1 precursor (ec 3.4.21.-) (l56). [source:swissprot;acc:q92743]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
5066.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5925.38\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16942\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
spectrin beta chain, brain 4 (spectrin, non-erythroid beta chain 4) (beta-v spectrin) (bspecv). [source:swissprot;acc:q9nrc6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
45987\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56777.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.23463\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.208\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.168\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09436\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
375\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
45 kda calcium-binding protein precursor (cab45) (stromal cell-derived factor 4) (sdf-4). [source:swissprot;acc:q9brk5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
45987\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56777.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.23463\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l35. [source:swissprot;acc:p42766]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
50.2545\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.5637\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10295\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.686\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.516\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09407\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
estradiol 17 beta-dehydrogenase 1 (ec 1.1.1.62) (17-beta-hsd 1) (placental 17-beta-hydroxysteroid dehydrogenase) (20 alpha- hydroxysteroid dehydrogenase) (20-alpha-hsd) (e2dh). [source:swissprot;acc:p14061]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2323.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2452.23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05527\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
germ cell-less. [source:refseq;acc:nm\_022471]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
27.8491\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26.7806\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0399\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1062.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
952.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11487\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
tbp-associated factor 9l; neuronal cell death-related protein; taf9-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 31 kd; neuronal cell death-related gene in neuron-7; transcription associated factor tafii31l; transcription initiation factor iid, 31kd subunit. [source:refseq;acc:nm\_015975]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
14247.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13686.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04097\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm1 (small nuclear ribonuclear casm) (cancer-associated sm-like). [source:swissprot;acc:o15116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4700.42\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5492.63\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16854\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
376\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32.3671\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31.1453\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03923\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.2554\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.5688\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10285\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
44050 protein. [source:refseq;acc:nm\_178832]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
17385.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14889.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16769\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
galectin-4 (lactose-binding lectin 4) (l-36 lactose binding protein) (l36lbp) (antigen ny-co-27). [source:swissprot;acc:p56470]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
46021.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56813.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.2345\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1062.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
952.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11487\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.017\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
234.945\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09395\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 1 (ec 3.1.3.48) (protein-tyrosine phosphatase 1b) (ptp-1b). [source:swissprot;acc:p18031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4912.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4658.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05438\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
10284.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10695.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03993\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
377\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s acidic ribosomal protein p1. [source:swissprot;acc:p05386]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
45.8794\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
47.6722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03908\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
atp-dependent clp protease atp-binding subunit clpx-like, mitochondrial precursor. [source:swissprot;acc:o76031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
884.254\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
931.405\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05332\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
creatine kinase, ubiquitous mitochondrial precursor (ec 2.7.3.2) (u- mtck) (mia-ck) (acidic-type mitochondrial creatine kinase). [source:swissprot;acc:p12532]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
570.099\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
634.654\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11323\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.481\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09391\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
integrin beta-3 precursor (platelet membrane glycoprotein iiia) (gpiiia) (cd61 antigen). [source:swissprot;acc:p05106]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14512.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13958.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0397\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l2. [source:refseq;acc:nm\_015950]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.2554\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.5687\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10285\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear inhibitor of protein phosphatase-1 (nipp-1) (protein phosphatase 1, regulatory inhibitor subunit 8) [includes: activator of rna decay (ec 3.1.4.-) (ard-1)]. [source:swissprot;acc:q12972]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
17385.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14889.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16769\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ornithine decarboxylase (ec 4.1.1.17) (odc). [source:swissprot;acc:p11926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
33044.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
40781.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.23412\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
378\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l30. [source:swissprot;acc:p04645]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.593\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.365\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09387\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
actin, cytoplasmic 2 (gamma-actin). [source:swissprot;acc:p02571]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
703.068\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
739.623\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05199\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
anaphase promoting complex subunit 11 (hepatocellular carcinoma associated ring finger protein) (hspc214). [source:swissprot;acc:q9nyg5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
74.2677\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.5378\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03816\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4 gamma, 3. [source:refseq;acc:nm\_003760]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
15034.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18552.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.23398\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
hira-interacting protein 5 (cgi-33). [source:swissprot;acc:q9ums0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
12471.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14561.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.16758\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l4 isoform a. [source:refseq;acc:nm\_015956]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
50.5816\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.8738\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10263\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
neurocalcin delta. [source:swissprot;acc:p29554]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4946.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5466.65\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10514\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protocadherin 16 precursor (cadherin 19) (cadherin fibroblast 1). [source:swissprot;acc:q96jq0]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
19713.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18962.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0396\vspace{3pt}}\\\cline{1-2}\cline{5-7}
\multirow{5}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
379\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 10 (26s proteasome regulatory subunit p28) (gankyrin). [source:swissprot;acc:o75832]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
11228.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10806\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03909\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
241.509\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
264.163\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0938\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
aminoadipate-semialdehyde synthase; lysine-ketoglutarate reductase /saccharopine dehydrogenase; lysine-2-oxoglutarate reductase; aminoadipic semialdehyde synthase. [source:refseq;acc:nm\_005763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
33010.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
40732.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.23391\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ethanolamine-phosphate cytidylyltransferase (ec 2.7.7.14) (phosphorylethanolamine transferase) (ctp:phosphoethanolamine cytidylyltransferase). [source:swissprot;acc:q99447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1927.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1833.64\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05125\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ptb domain adaptor protein ced-6; engulfment adapter protein. [source:refseq;acc:nm\_016315]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.5128\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.604\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10235\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/