Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the
value_type as 'ranked' since this provides a very robust analysis method.
intercation map as 'high confidence'
network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Filtered Value Type Gene Rank description green Interaction Map Network Comparison Type red network_comparison
Results: HTML CSV LaTeX
Showing element 551 to 600 of 38536 in total
Filtered: 0
Value Type: Measured
Network Comparison Type: Divided

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
276\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apoptosis inhibitor fksg2. [source:swissprot;acc:q9hau6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12125.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10817.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12092\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 230 (zinc finger protein fdzf2). [source:swissprot;acc:q9uie0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1970.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2353.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19439\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
277\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
disks large-associated protein 2 (dap-2) (sap90/psd-95-associated protein 2) (sapap2) (psd-95/sap90 binding protein 2) (fragment). [source:swissprot;acc:q9p1a6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
975.647\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
870.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12024\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
krab zinc finger protein hzf26 (fragment). [source:sptrembl;acc:q9bze6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1970.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2353.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19439\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
278\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding protein nova-1 (neuro-oncological ventral antigen 1) (onconeural ventral antigen-1) (paraneoplastic ri antigen) (ventral neuron-specific protein 1). [source:swissprot;acc:p51513]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1932\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2162.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 195. [source:swissprot;acc:o14628]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1970.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2353.86\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19439\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
279\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cell adhesion molecule with homology to l1cam precursor; neural cell adhesion molecule; cell adhesion molecule l1-like; l1 cell adhesion molecule 2. [source:refseq;acc:nm\_006614]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
610.424\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
545.902\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11819\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 233. [source:refseq;acc:nm\_181756]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1970.95\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19438\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
280\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
neural cell adhesion molecule l1 precursor (n-cam l1) (cd171 antigen). [source:swissprot;acc:p32004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
610.424\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
545.902\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11819\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 334. [source:swissprot;acc:q9hcz1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1970.91\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19438\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
281\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor tfiid 31 kda subunit (tafii-31) (tafii-32) (tafii32). [source:swissprot;acc:q16594]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
610.424\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
545.902\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11819\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger imprinted 3. [source:swissprot;acc:q96pe6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19437\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
282\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pepsin a precursor (ec 3.4.23.1). [source:swissprot;acc:p00790]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
199.751\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
178.955\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11621\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 223. [source:swissprot;acc:q9uk11]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19436\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
283\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
lon protease homolog, mitochondrial precursor (ec 3.4.21.-) (lon protease-like protein) (lonp) (lonhs). [source:swissprot;acc:p36776]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
753.849\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
841.301\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11601\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 350; zinc-finger protein zbrk1. [source:refseq;acc:nm\_021632]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19436\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
284\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l23 (l17). [source:swissprot;acc:p23131]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1956.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1753.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11547\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to zinc finger protein 20 (zinc finger protein kox13) (dkfzp572p0920). [source:refseq;acc:nm\_145233]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19436\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
285\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj408b20.3 (novel protein similar to 60s acidic ribosomal protein p2 (rplp2)). [source:sptrembl;acc:q9h5a9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3010.22\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2698.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11547\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 222. [source:swissprot;acc:q9uk12]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2354.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19436\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
286\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6127.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5497.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11465\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 169 (fragment). [source:swissprot;acc:q14929]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1971.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19433\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
287\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5-aminolevulinic acid synthase, nonspecific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-h). [source:swissprot;acc:p13196]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
808.929\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
726.245\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11385\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
b-lymphocyte activation-related protein. [source:sptrembl;acc:q96pn3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.04\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19432\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
288\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
likely ortholog of mouse shc sh2-domain binding protein 1. [source:refseq;acc:nm\_024745]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1161.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1293.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11371\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 8 (zinc finger protein hf.18) (fragment). [source:swissprot;acc:p17098]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19431\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
289\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
tubby protein homolog. [source:swissprot;acc:p50607]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4228.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3797.57\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11341\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zfp6 (fragment). [source:sptrembl;acc:q92967]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1943\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
290\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase ii, beta isozyme (ec 5.99.1.3). [source:swissprot;acc:q02880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1525.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1370.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11288\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 80 (znfpt17). [source:swissprot;acc:p51504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19429\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
291\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to ribosomal protein, large, p0. [source:sptrembl;acc:q96fq9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2179.77\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1961.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11151\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 187. [source:refseq;acc:nm\_152736]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19429\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
292\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ba271b5.1 (similar to ribosomal protein s7). [source:sptrembl;acc:q9h1s9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12473\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11223\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11138\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 302 (znf135-like) (znf140-like). [source:swissprot;acc:q9nr11]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2355.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19429\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
293\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
block 23. [source:sptrembl;acc:q8nhw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2159.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1943.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11127\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 95 homolog (zfp-95). [source:swissprot;acc:q9y2l8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1972.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2356.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19428\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
294\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mesoderm induction early response 1. [source:refseq;acc:nm\_020948]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1723.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1914.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 32 (zinc finger protein kox30) (fragment). [source:swissprot;acc:p17041]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1973.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2357.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19422\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
295\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adaptor-related protein complex 1, mu 2 subunit (mu-adaptin 2) (adaptor protein complex ap-1 mu-2 subunit) (golgi adaptor ha1/ap1 adaptin mu-2 subunit) (clathrin assembly protein assembly protein complex 1 medium chain 2) (ap-mu chain family member mu1b). [source:swissprot;acc:q9y6q5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
384.843\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
426.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10902\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 77 (znfpt1) (fragment). [source:swissprot;acc:q15935]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1976.03\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2359.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19409\vspace{3pt}}\\\cline{1-3}\cline{5-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
296\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-interacting protein that associates with traf3; interleukin 13 receptor alpha 1-binding protein-1. [source:refseq;acc:nm\_015650]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
363\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19408\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pnas-18. [source:sptrembl;acc:q9bzu3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2035.28\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2256.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10847\vspace{3pt}}\\\cline{1-3}\cline{5-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
297\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s29. [source:swissprot;acc:p30054]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1895.38\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1711.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10737\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ttf-i interacting peptide 20 (fragment). [source:sptrembl;acc:o00455]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1976.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2359.74\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19408\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
298\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
williams-beuren syndrome chromosome region 14 protein (ws basic-helix- loop-helix leucine zipper protein) (ws-bhlh) (mlx interactor). [source:swissprot;acc:q9np71]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
848\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
939\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10731\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger-like protein (fragment). [source:sptrembl;acc:q9uia8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1976.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2359.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19407\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
299\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin-dependent kinases regulatory subunit 1 (cks-1) (sid1334) (pnas-16 / pnas-143). [source:swissprot;acc:p33551]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2015.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2231.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10717\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 75. [source:swissprot;acc:p51815]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1976.69\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
2360.26\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.19405\vspace{3pt}}}\\\cline{1-3}\cline{5-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
300\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative zinc finger protein (fragment). [source:sptrembl;acc:q8n692]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1976.61\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
2360.18\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sterol regulatory element binding protein-2 (srebp-2) (sterol regulatory element-binding transcription factor 2). [source:swissprot;acc:q12772]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1205.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1334.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10712\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/