Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 500 to 549 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
500\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ING2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inhibitor of growth family, member 1-like; inhibitor of growth 1-like. [source:refseq;acc:nm\_001564]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.662\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07127\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
501\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytochrome c1, heme protein, mitochondrial precursor (cytochrome c-1). [source:swissprot;acc:p08574]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
238.704\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
255.68\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.07112\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
502\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARHGAP26\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligophrenin-1 like protein (gtpase regulator associated with focal adhesion kinase). [source:swissprot;acc:q9una1]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
503\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RGN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
senescence marker protein-30 (smp-30) (regucalcin) (rc). [source:swissprot;acc:q15493]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
504\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OPHN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligophrenin 1. [source:swissprot;acc:o60890]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
505\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NOC3L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ad24 protein. [source:refseq;acc:nm\_022451]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.334\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.672\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.071\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
506\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ING1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inhibitor of growth family, member 1; inhibitor of growth 1. [source:refseq;acc:nm\_005537]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.535\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.476\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
507\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
WDR12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wd-repeat protein 12 (ytm1 homolog). [source:swissprot;acc:q9gzl7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.299\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.729\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07059\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
508\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mast cell carboxypeptidase a precursor (ec 3.4.17.1) (mc-cpa) (carboxypeptidase a3). [source:swissprot;acc:p15088]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
177.698\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07058\vspace{3pt}}\\\cline{1-3}\cline{5-6}
\parbox{\wcA}{\vspace{3pt}\noindent
509\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPA6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
carboxypeptidase b precursor. [source:refseq;acc:nm\_020361]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
190.239\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.07057\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
510\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
plasma carboxypeptidase b2 isoform a preproprotein; carboxypeptidase u; thrombin-activatable fibrinolysis inhibitor; carboxypeptidase b-like protein; thrombin-activable fibrinolysis inhibitor. [source:refseq;acc:nm\_001872]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
177.699\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.24\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
511\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NOL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proliferating-cell nucleolar antigen p120 (proliferation-associated nucleolar protein p120). [source:swissprot;acc:p46087]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.053\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.725\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06986\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
512\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BOP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
block of proliferation 1. [source:swissprot;acc:q14137]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.794\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.433\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06979\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
513\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DVL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-1 (dishevelled-1) (dsh homolog 1). [source:swissprot;acc:o14640]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.596\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.344\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06975\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
514\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DVL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-2 (dishevelled-2) (dsh homolog 2). [source:swissprot;acc:o14641]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.613\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.382\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06963\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
515\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PES1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pescadillo homolog 1. [source:swissprot;acc:o00541]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.297\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.941\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06962\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
516\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LSM8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm8. [source:swissprot;acc:o95777]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.422\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0695\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
517\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MTX2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
metaxin 2. [source:swissprot;acc:o75431]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.537\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.793\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06949\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleostemin; putative nucleotide binding protein, estradiol-induced. [source:refseq;acc:nm\_014366]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.858\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.563\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06947\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DVL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.702\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.582\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06902\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC35D2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sqv-7-like protein (fragment). [source:sptrembl;acc:o95454]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.754\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.565\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06897\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOSC4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exosome complex exonuclease rrp41 (ec 3.1.13.-) (ribosomal rna processing protein 41) (p12a). [source:swissprot;acc:q9npd3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PLRG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pleiotropic regulator 1 (prl1homolog, arabidopsis); pleiotropic regulator 1 (prl1, arabidopsis homolog). [source:refseq;acc:nm\_002669]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.893\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.523\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOSC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exosome complex exonuclease rrp4 (ec 3.1.13.-) (ribosomal rna processing protein 4). [source:swissprot;acc:q13868]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOSC3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exosome complex exonuclease rrp40 (ec 3.1.13.-) (ribosomal rna processing protein 40) (p10) (cgi-102). [source:swissprot;acc:q9nqt5]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOSC5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exosome complex exonuclease rrp46 (ec 3.1.13.-) (ribosomal rna processing protein 46) (p12b) (chronic myelogenous leukemia tumor antigen 28). [source:swissprot;acc:q9nqt4]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RRP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nnp-1 protein (novel nuclear protein 1) (nucleolar protein nop52) (nop52) (d21s2056e). [source:swissprot;acc:p56182]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.538\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06884\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
527\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX31\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
248.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232.579\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06871\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
528\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
YME1L1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
yme1-like 1 isoform 3; atp-dependent metalloprotease ftsh1 homolog. [source:refseq;acc:nm\_014263]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.146\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
237.393\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06864\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
529\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX18\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atp-dependent rna helicase ddx18 (dead-box protein 18) (myc-regulated dead-box protein) (mrdb). [source:swissprot;acc:q9nvp1]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.653\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.506\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06856\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
530\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LSM6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm6 (sm protein f). [source:swissprot;acc:q9y4y8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.483\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.994\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06803\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
531\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRPF19\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear matrix protein nmp200 related to splicing factor prp19. [source:refseq;acc:nm\_014502]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.356\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.149\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06793\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
532\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZNF622\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger-like protein 9. [source:refseq;acc:nm\_033414]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
250.942\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
235.004\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06782\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
533\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC45A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
membrane-associated transporter protein (aim-1 protein) (melanoma antigen aim1). [source:swissprot;acc:q9umx9]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
534\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein-like 1 (gtp-binding protein hsr1). [source:swissprot;acc:p36915]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
535\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2H\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerases i, ii, and iii 17.1 kda polypeptide (ec 2.7.7.6) (rpb17) (rpb8) (rpabc3). [source:swissprot;acc:p52434]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
236.662\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.708\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0678\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
536\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SSB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lupus la protein (sjogren syndrome type b antigen) (ss-b) (la ribonucleoprotein) (la autoantigen). [source:swissprot;acc:p05455]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.531\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.136\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06778\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
537\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DHX15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative pre-mrna splicing factor rna helicase (deah box protein 15) (atp-dependent rna helicase #46). [source:swissprot;acc:o43143]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.803\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.301\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06736\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
538\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 7.6 kda polypeptide (ec 2.7.7.6) (rpb10) (rpb7.6) (rpabc5). [source:swissprot;acc:p52436]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.627\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.604\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06724\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
539\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MEMO1P\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein cgi-27 (c21orf19-like protein). [source:swissprot;acc:q9y316]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
236.964\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.86\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06708\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
540\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEPHS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
selenide,water dikinase 2 (ec 2.7.9.3) (selenophosphate synthetase 2) (selenium donor protein 2). [source:swissprot;acc:q99611]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
222.156\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
208.201\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
541\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MICAL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
flavoprotein oxidoreductase mical2. [source:refseq;acc:nm\_014632]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
542\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
INPP4B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inositol polyphosphate-4-phosphatase, type ii, 105kd; inositol polyphosphate 4-phosphatase ii; 4-phosphatase ii. [source:refseq;acc:nm\_003866]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
543\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEPHS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
selenide,water dikinase 1 (ec 2.7.9.3) (selenophosphate synthetase 1) (selenium donor protein 1). [source:swissprot;acc:p49903]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
544\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
INPP4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inositol polyphosphate-4-phosphatase, type 1 isoform b; inositol polyphosphate-4-phosphatase, type i, 107kd; 4-phosphatase i; inositol polyphosphate-4-phosphatase i. [source:refseq;acc:nm\_001566]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
545\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EIF6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 6 (eif-6) (b4 integrin interactor) (cab) (p27(bbp)) (b(2)gcn homolog). [source:swissprot;acc:p56537]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
248.866\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.287\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06678\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
546\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
WAS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein (wasp). [source:swissprot;acc:p42768]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.222\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
194.262\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06671\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
547\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene c-crk (p38) (adapter molecule crk). [source:swissprot;acc:p46108]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
207.26\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
194.346\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06645\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
548\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ABL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosine-protein kinase abl2 (ec 2.7.1.112) (tyrosine kinase arg). [source:swissprot;acc:p42684]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
549\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [source:swissprot;acc:p12931]\vspace{3pt}}&&&\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/