Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 351 to 400 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
351\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisome biogenesis factor 1 (peroxin-1) (peroxisome biogenesis disorder protein 1). [source:swissprot;acc:o43933]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
242.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
265.696\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
352\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein 1-4 (atp binding protein associated with cell differentiation). [source:swissprot;acc:o14530]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
353\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rgs19-interacting protein 1 (gaip c-terminus interacting protein gipc) (rgs-gaip interacting protein) (tax interaction protein 2) (tip-2). [source:swissprot;acc:o14908]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
231.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.252\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09694\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
354\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
234.691\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
257.442\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
355\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 6. [source:swissprot;acc:o43752]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
234.673\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
257.414\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09691\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
356\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10a (csa-19). [source:swissprot;acc:p53025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
243.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.796\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09684\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
357\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [source:swissprot;acc:p27635]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
243.12\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.661\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09683\vspace{3pt}}}\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
358\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
266.662\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
359\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l4 (l1). [source:swissprot;acc:p36578]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
239.277\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
262.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09678\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
360\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein transport protein sec61 gamma subunit. [source:swissprot;acc:p38384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
243.072\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.559\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09663\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
361\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l17; lyst-interacting protein lip2. [source:refseq;acc:nm\_022061]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.248\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09644\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
362\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
apical-like protein (apxl protein). [source:swissprot;acc:q13796]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
231.492\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.136\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09641\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
363\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
shroom-related protein; f-actin-binding protein; likely ortholog of mouse shroom. [source:refseq;acc:nm\_020859]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
231.481\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.131\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09639\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
364\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 140 kda polypeptide (ec 2.7.7.6) (rna polymerase ii subunit 2) (rpb2). [source:swissprot;acc:p30876]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
243.208\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.617\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09625\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
365\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l36, mitochondrial precursor (l36mt) (brca1- interacting protein 1). [source:swissprot;acc:q9p0j6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.744\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09609\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
366\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s5. [source:swissprot;acc:p46782]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.473\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.756\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09602\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
367\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein m (hnrnp m). [source:swissprot;acc:p52272]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
234.146\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
256.627\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09601\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
368\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trna pseudouridine synthase a (ec 4.2.1.70) (pseudouridylate synthase i) (pseudouridine synthase i) (uracil hydrolyase). [source:swissprot;acc:q9y606]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.715\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09501\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
369\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l12, mitochondrial precursor (l12mt) (5c5-2). [source:swissprot;acc:p52815]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
242.159\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
265.104\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09475\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
370\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nudix (nucleoside diphosphate linked moiety x)-type motif 12. [source:refseq;acc:nm\_031438]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
371\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase, 52kda, polypeptide 1; ribosomal protein s6 kinase, 52kd, polypeptide 1. [source:refseq;acc:nm\_012424]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
186.52\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
170.42\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09447\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
372\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
373\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l11, mitochondrial precursor (l11mt) (cgi-113). [source:swissprot;acc:q9y3b7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.37\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09442\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
374\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
267.208\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.168\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09436\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
375\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.686\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.516\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09407\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
376\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
257.017\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.945\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09395\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
377\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.691\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.481\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09391\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
378\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l30. [source:swissprot;acc:p04645]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.593\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.365\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09387\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
379\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.509\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
264.163\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0938\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
380\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [source:refseq;acc:nm\_003169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.109\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
264.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09368\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
381\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor tfiid 55 kda subunit (tafii-55) (tafii55). [source:swissprot;acc:q15545]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
200.586\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
183.423\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09357\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
382\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tata box binding protein-associated factor, rna polymerase ii, q; taf7-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 50 kd; tbp-associated factor, rna polymerase ii, q. [source:refseq;acc:nm\_024885]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
200.791\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
183.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09328\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
383\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
237.862\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.739\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09242\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
384\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
266.421\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
244.236\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09083\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
385\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
386\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
242.238\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
264.11\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
387\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
388\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
227.575\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
208.756\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09015\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
389\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
390\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l13, mitochondrial (l13mt). [source:swissprot;acc:q9byd1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
241.828\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
263.62\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09011\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
391\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
392\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l13a (23 kda highly basic protein). [source:swissprot;acc:p40429]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
263.615\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09008\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
393\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
225.719\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.072\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09005\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
394\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidylpeptidase 9; dipeptidyl peptidase 9; dipeptidyl peptidase iv-related protein-2. [source:refseq;acc:nm\_139159]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
218.827\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
238.407\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08948\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
395\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidyl peptidase 8 isoform 2; dipeptidyl peptidase 8. [source:refseq;acc:nm\_017743]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
396\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative eukaryotic translation initiation factor 1a (eif-1a) (eif- 4c). [source:swissprot;acc:o75642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.801\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
262.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08945\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
397\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, gamma subunit (tcp-1-gamma) (cct-gamma). [source:swissprot;acc:p49368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
110.689\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
101.613\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08932\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
398\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.818\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
238.358\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0893\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
399\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.889\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.226\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08821\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
400\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin-like protein (phlp). [source:swissprot;acc:q13371]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/