Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo Value Type description Network Comparison Type Filtered Interaction Map red green network_comparison
    Results: HTML CSV LaTeX Showing element 277 to 326 of 502 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Filtered: 0
    Interaction Map: High confidence
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
277\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11096.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10251.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08245\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
278\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STAMBPL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam (amsh) like protein. [source:refseq;acc:nm\_020799]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11644\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10763.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08181\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
279\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANAPC11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
anaphase promoting complex subunit 11 (hepatocellular carcinoma associated ring finger protein) (hspc214). [source:swissprot;acc:q9nyg5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10614.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9812.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08171\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
280\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRNKL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
crooked neck-like protein 1 (crooked neck homolog) (hcrn) (cgi-201) (mstp021). [source:swissprot;acc:q9bzj0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10620.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11471.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08014\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
281\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phospholipid scramblase 3 (pl scramblase 3) (ca(2+)-dependent phospholipid scramblase 3). [source:swissprot;acc:q9nry6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12522.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13514.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0792\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
282\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SH3GL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [source:swissprot;acc:q99961]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8095.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8732.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07868\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
283\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FAIM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lifeguard; kiaa0950 protein. [source:refseq;acc:nm\_012306]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11107.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11959.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07672\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
284\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TYRL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosinase-related gene segment, exon 5 (fragment). [source:sptrembl;acc:q15677]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14898.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16041.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0767\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
285\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj408b20.3 (novel protein similar to 60s acidic ribosomal protein p2 (rplp2)). [source:sptrembl;acc:q9h5a9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10686\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9925.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07661\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
286\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DKC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dyskerin (nucleolar protein nap57) (cbf5 homolog). [source:swissprot;acc:o60832]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12228.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11367.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07573\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
287\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [source:swissprot;acc:p12931]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17842.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16590.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07549\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
288\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TYRP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor (ec 1.14.18.-) (dhica oxidase) (tyrosinase-related protein 1) (trp-1) (trp1) (trp) (catalase b) (glycoprotein-75) (melanoma antigen gp75). [source:swissprot;acc:p17643]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14930.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16053\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07517\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
289\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FOXG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box protein g1c (forkhead-related protein fkhl3) (hfk3) (fragment). [source:swissprot;acc:q14488]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
15147.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
14091.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.07489\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
290\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
interleukin-1 receptor-associated kinase 4; interleukin-1 receptor associated kinase 4. [source:refseq;acc:nm\_016123]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
291\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FUBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
far upstream element-binding protein; far upstream element binding protein; fuse-binding protein. [source:refseq;acc:nm\_003902]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10922.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11731.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07406\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
292\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [source:refseq;acc:nm\_032260]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
10280.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9574.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07368\vspace{3pt}}\\\cline{1-1}\cline{4-6}
\parbox{\wcA}{\vspace{3pt}\noindent
293\vspace{3pt}}&&&\parbox{\wcD}{\vspace{3pt}\noindent
10287.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9583.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07344\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
294\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TAF12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription initiation factor tfiid 20/15 kda subunits (tafii- 20/tafii-15) (tafii20/tafii15). [source:swissprot;acc:q16514]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13981.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13025.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07343\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
295\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor-like protein morf4 (mortality factor 4) (cellular senescence-related protein 1) (sen1). [source:swissprot;acc:q9y690]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13687.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12751.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07339\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
296\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
lon protease homolog, mitochondrial precursor (ec 3.4.21.-) (lon protease-like protein) (lonp) (lonhs). [source:swissprot;acc:p36776]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10194.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10941.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07335\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
297\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DAZAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
daz associated protein 1 isoform b; deleted in azoospermia associated protein 1. [source:refseq;acc:nm\_018959]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8123.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8719\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07327\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
298\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein sa (p40) (34/67 kda laminin receptor) (colon carcinoma laminin-binding protein) (nem/1chd4) (multidrug resistance- associated protein mgr1-ag). [source:swissprot;acc:p08865]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11977.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12842.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07219\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
299\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
3 beta-hydroxysteroid dehydrogenase (fragments). [source:sptrembl;acc:q9udk8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12338.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11512.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07178\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
300\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKACG\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
camp-dependent protein kinase, gamma-catalytic subunit (ec 2.7.1.37) (pka c-gamma). [source:swissprot;acc:p22612]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9270.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8650.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0717\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
301\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SH2B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sh2-b homolog; likely ortholog of mouse sh2 domain-containing putative adapter sh2-b; sh2-b gamma signaling protein; sh2-b alpha signaling protein. [source:refseq;acc:nm\_015503]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12783\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13698\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07158\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
302\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 12.3 (p205) (receptor of activated protein kinase c 1) (rack1) (receptor for activated c kinase). [source:swissprot;acc:p25388]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7386.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6895.44\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07125\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
303\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
intersectin 2 (sh3 domain-containing protein 1b) (sh3p18) (sh3p18-like wasp associated protein). [source:swissprot;acc:q9nzm3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11431.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12244.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07109\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
304\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
sprouty homolog 4 (spry-4). [source:swissprot;acc:q9c004]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8021.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7496.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07003\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
305\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
microtubule-interacting protein that associates with traf3; interleukin 13 receptor alpha 1-binding protein-1. [source:refseq;acc:nm\_015650]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9431\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8815\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06988\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
306\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MLXIPL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
williams-beuren syndrome chromosome region 14 protein (ws basic-helix- loop-helix leucine zipper protein) (ws-bhlh) (mlx interactor). [source:swissprot;acc:q9np71]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5540\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5921\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06877\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
307\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba271b5.1 (similar to ribosomal protein s7). [source:sptrembl;acc:q9h1s9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1091\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1021\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06856\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
308\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
intersectin 1 (sh3 domain-containing protein 1a) (sh3p17). [source:swissprot;acc:q15811]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11414.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12191.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06814\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LBP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lipopolysaccharide-binding protein precursor (lbp). [source:swissprot;acc:p18428]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13651\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14572\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06747\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
310\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycine cleavage system h protein, mitochondrial precursor. [source:swissprot;acc:p23434]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9328.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8741.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06718\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
311\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l23 (l17). [source:swissprot;acc:p23131]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10253.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9622.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06558\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
312\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-5 like subunit. [source:swissprot;acc:q9y3k8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11959.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12731.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06449\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
313\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNG4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-4 subunit. [source:swissprot;acc:p50150]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11935.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12698.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06395\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
314\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLTCL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10301.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10957.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06369\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
315\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RRM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribonucleoside-diphosphate reductase m1 chain (ec 1.17.4.1) (ribonucleotide reductase large chain). [source:swissprot;acc:p23921]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12121.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12887.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06319\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
316\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj718p11.1.2 (novel class ii aminotransferase similar to serine palmotyltransferase (isoform 2)) (fragment). [source:sptrembl;acc:q9ugb5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10768.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11444\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06273\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
317\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
protein transport protein sec24c (sec24-related protein c). [source:swissprot;acc:p53992]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19939\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18778\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06183\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
318\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TMOD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitous tropomodulin (u-tmod) (tropomodulin 3). [source:swissprot;acc:q9nyl9]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
8918.54\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
9465.32\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06131\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
319\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNX9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sorting nexin 9 (sh3 and px domain-containing protein 1) (sdp1 protein). [source:swissprot;acc:q9y5x1]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
320\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARF3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp-ribosylation factor 3. [source:swissprot;acc:p16587]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11627.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10958.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0611\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
321\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenine phosphoribosyltransferase (ec 2.4.2.7) (aprt). [source:swissprot;acc:p07741]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
11634.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
10989.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.05864\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HSD17B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
estradiol 17 beta-dehydrogenase 1 (ec 1.1.1.62) (17-beta-hsd 1) (placental 17-beta-hydroxysteroid dehydrogenase) (20 alpha- hydroxysteroid dehydrogenase) (20-alpha-hsd) (e2dh). [source:swissprot;acc:p14061]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
323\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ras-related c3 botulinum toxin substrate 1 (p21-rac1) (ras-like protein tc25). [source:swissprot;acc:p15154]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
17387.1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
16427.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.05843\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
324\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAC3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ras-related c3 botulinum toxin substrate 3 (p21-rac3). [source:swissprot;acc:o14658]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
325\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KCTD10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mstp028 protein. [source:refseq;acc:nm\_031954]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7965.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7528.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05811\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
326\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dead/h (asp-glu-ala-asp/his) box polypeptide 11; dead/h box-11 (chl1-related helicase gene-1); yeast chl1 homolog. [source:refseq;acc:nm\_030655]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11948.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11295.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05779\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/