Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 833 to 882 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
833\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pc4 and sfrs1 interacting protein 2; pc4 and sfrs1 interacting protein 1; transcriptional coactivator p52/p75. [source:refseq;acc:nm\_033222]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
231.734\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
222.222\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0428\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
834\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l8. [source:swissprot;acc:p25120]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
835\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HDGF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hepatoma-derived growth factor (hdgf) (high-mobility group protein 1- like 2) (hmg-1l2). [source:swissprot;acc:p51858]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
836\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HDGFL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pwwp domain containing 1; hdgf (hepatoma-derived growth factor) like. [source:refseq;acc:nm\_138574]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
837\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable atp-dependent rna helicase p54 (oncogene rck) (dead-box protein 6). [source:swissprot;acc:p26196]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
838\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TMEM131\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rw1 protein (fragment). [source:swissprot;acc:q92545]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
839\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLEC11A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
stem cell growth factor; lymphocyte secreted c-type lectin; lymphocyte secreted c-type lectin. [source:refseq;acc:nm\_002975]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
177.776\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
170.499\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04268\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
840\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TOMM20\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial import receptor subunit tom20 homolog (mitochondrial 20 kda outer membrane protein) (outer mitochondrial membrane receptor tom20). [source:swissprot;acc:q15388]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
198.781\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
190.66\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04259\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
841\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PEX19\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal farnesylated protein (33 kda housekeeping protein) (peroxin 19). [source:swissprot;acc:p40855]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
842\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CCDC22\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
jm1 protein. [source:refseq;acc:nm\_014008]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.806\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04248\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
843\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GART\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trifunctional purine biosynthetic protein adenosine-3 [includes: phosphoribosylamine--glycine ligase (ec 6.3.4.13) (gars) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase); phosphoribosylformylglycinamidine cyclo-ligase (ec 6.3.3.1) (airs) (phosphoribosyl-aminoimidazole synthetase) (air synthase); phosphoribosylglycinamide formyltransferase (ec 2.1.2.2) (gart) (gar transformylase) (5'-phosphoribosylglycinamide transformylase)]. [source:swissprot;acc:p22102]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.521\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.796\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04244\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
844\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLEC3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
c-type lectin superfamily member 1 precursor (cartilage-derived c-type lectin). [source:swissprot;acc:o75596]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
178.033\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
170.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04223\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
845\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LSM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm1 (small nuclear ribonuclear casm) (cancer-associated sm-like). [source:swissprot;acc:o15116]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.599\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04193\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
846\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
methyltransferase like 2. [source:refseq;acc:nm\_018396]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
147.211\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
153.371\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04184\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
847\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DYNLT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic dynein light chain (t-complex testis-specific protein 1 homolog) (protein cw-1). [source:swissprot;acc:q15763]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
848\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FZR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fzr1 protein; fizzy-related protein; cdc20-like 1b. [source:refseq;acc:nm\_016263]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
849\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PCSK5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proprotein convertase subtilisin/kexin type 5 precursor (ec 3.4.21.-) (proprotein convertase pc5) (subtilisin/kexin-like protease pc5) (convertase pc5) (pc6) (hpc6). [source:swissprot;acc:q92824]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
850\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPSF4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
107.842\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
112.329\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04161\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
851\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KIAA1012\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trs85 homolog. [source:swissprot;acc:q9y2l5]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
852\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HPRT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
193.114\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.412\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04154\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
853\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
WDR33\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wd-repeat protein wdc146. [source:swissprot;acc:q9c0j8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
108.289\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
112.772\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0414\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
854\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPSF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
855\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLEC3B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tetranectin precursor (tn) (plasminogen-kringle 4 binding protein). [source:swissprot;acc:p05452]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
178.514\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
171.42\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04138\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
856\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
XPR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xenotropic and polytropic retrovirus receptor. [source:refseq;acc:nm\_004736]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.028\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.623\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04068\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
857\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PNO1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putatative 28 kda protein. [source:refseq;acc:nm\_020143]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.241\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.467\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0406\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
858\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STX12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 12. [source:refseq;acc:nm\_177424]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.446\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.997\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04043\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
859\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l39. [source:swissprot;acc:p02404]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}}\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
860\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l18a. [source:swissprot;acc:q02543]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
861\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS19\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s19. [source:swissprot;acc:p39019]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
862\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL31\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l31. [source:swissprot;acc:p12947]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
863\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSNK2A1P\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
casein kinase ii, alpha chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19138]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
240.194\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
230.957\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03999\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
864\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSNK2A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
casein kinase ii, alpha' chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19784]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
865\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BTF3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor btf3 (rna polymerase b transcription factor 3). [source:swissprot;acc:p20290]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.961\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.814\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03997\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
866\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SRP68\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
signal recognition particle 68 kda protein (srp68). [source:swissprot;acc:q9uhb9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.306\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.806\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03994\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
867\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s3a. [source:swissprot;acc:p49241]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.689\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.674\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03981\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
868\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MVD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
diphosphomevalonate decarboxylase (ec 4.1.1.33) (mevalonate pyrophosphate decarboxylase) (mevalonate (diphospho)decarboxylase). [source:swissprot;acc:p53602]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.298\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.571\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03975\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
869\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOC4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exocyst complex component sec8. [source:swissprot;acc:q96a65]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.449\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03969\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
870\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor btf3 homolog 3. [source:swissprot;acc:q13892]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.832\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03962\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
871\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPSF2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 100 kda subunit (cpsf 100 kda subunit) (fragment). [source:swissprot;acc:q9p2i0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
110.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
114.552\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03949\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
872\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein k (hnrnp k) (dc-stretch binding protein) (csbp) (transformation upregulated nuclear protein) (tunp). [source:swissprot;acc:q07244]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
224.413\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
233.272\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03948\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
873\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRPF4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u4/u6 small nuclear ribonucleoprotein prp4 (u4/u6 snrnp 60 kda protein) (wd splicing factor prp4) (hprp4). [source:swissprot;acc:o43172]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
874\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-1 subunit (ampk gamma-1 chain) (ampkg). [source:swissprot;acc:p54619]\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
875\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-2 chain (ec 2.7.1.-) (ampk alpha-2 chain). [source:swissprot;acc:p54646]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
876\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-1 chain (ec 2.7.1.-) (ampk alpha-1 chain). [source:swissprot;acc:q13131]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
877\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-2 subunit (ampk beta-2 chain). [source:swissprot;acc:o43741]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
878\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
879\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-1 subunit (ampk beta-1 chain) (ampkb). [source:swissprot;acc:q9y478]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
880\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-2 subunit (ampk gamma-2 chain) (ampk gamma2) (h91620p). [source:swissprot;acc:q9ugj0]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
881\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MYCL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
l-myc-1 proto-oncogene protein. [source:swissprot;acc:p12524]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.604\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.001\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03928\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
882\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MYCN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
n-myc proto-oncogene protein. [source:swissprot;acc:p04198]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.601\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.008\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03924\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/