MK5 Microarray Data

Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

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Showing element 2675 to 2724 of 25824 in total

Interaction Map	High confidence
Filtered	1

Rank	description	Value Type	Network Comparison Type	red	green	network_comparison	
335	chromodomain helicase dna binding protein 5. [source:refseq;acc:nm_015557]	Ranked	Divided	312	284	1.09859	
335	histone acetyltransferase type b subunit 2 (retinoblastoma binding protein p46) (retinoblastoma-binding protein 7) (rbbp-7). [source:swissprot;acc:q16576]	Rooted	Subtracted	52.7146	60.0088	7.2942	
335	multisynthetase complex auxiliary component p43 [contains: endothelial-monocyte activating polypeptide ii (emap-ii) (small inducible cytokine subfamily e member 1)]. [source:swissprot;acc:q12904]	Ranked	Subtracted	223.273	202.423	20.85	
335	probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]	Measured	Divided	3494.31	4129.6	1.18181	
335	ribosomal protein l24-like; 60s ribosomal protein l30 isolog; my024 protein; homolog of yeast ribosomal like protein 24. [source:refseq;acc:nm_016304]	Squared	Divided	30651.3	38253.3	1.24802	
335	t-lak cell-originated protein kinase; spermatogenesis-related protein kinase; pdz-binding kinase; pbk; mapkk-like protein kinase; serine/threonine protein kinase. [source:refseq;acc:nm_018492]	Measured	Subtracted	1631.67	2664.55	1032.88	
336	60s ribosomal protein l11. [source:swissprot;acc:p39026]	Rooted	Divided	50.3167	45.4063	1.10814	
336	acid ceramidase precursor (ec 3.5.1.23) (acylsphingosine deacylase) (n-acylsphingosine amidohydrolase) (ac) (putative 32 kda heart protein) (php32). [source:swissprot;acc:q13510]	Squared	Subtracted	36109.8	42811.6	6701.8	
336	cyclin-dependent kinase 2-associated protein 1 (cdk2-associated protein 1) (putative oral cancer suppressor) (deleted in oral cancer- 1) (doc-1). [source:swissprot;acc:o14519]	Ranked	Divided	312	284	1.09859	
336	dna polymerase epsilon p12 subunit (dna polymerase epsilon subunit 4). [source:swissprot;acc:q9nr33]	Measured	Divided	3751.3	4431.34	1.18128	
336	j kappa-recombination signal binding protein (rbp-j kappa). [source:swissprot;acc:q06330]	Squared	Divided	46785.7	58383.2	1.24789	
336	kh domain containing, rna binding, signal transduction associated 3; sam68-like phosphotyrosine protein, t-star. [source:refseq;acc:nm_006558]	Measured	Subtracted	1631.67	2664.55	1032.88	
336	polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm_007195]	Rooted	Subtracted	59.4073	66.7002	7.2929	
336	rna polymerase i associated factor 53. [source:refseq;acc:nm_022490]	Ranked	Subtracted	241.045	261.874	20.829	
337	60s ribosomal protein l12. [source:swissprot;acc:p30050]	Ranked	Divided	243.583	267.527	1.0983	
337	carboxypeptidase b precursor. [source:refseq;acc:nm_020361]	Rooted	Divided	77.5801	70.0182	1.108	
337	homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]	Measured	Divided	20446.1	24136.4	1.18049	
337	human immunodeficiency virus type i enhancer binding protein 3. [source:refseq;acc:nm_024503]	Squared	Divided	46785.7	58383.2	1.24789	
337	kh domain containing, rna binding, signal transduction associated 1; gap-associated tyrosine phosphoprotein p62 (sam68). [source:refseq;acc:nm_006559]	Measured	Subtracted	1631.67	2664.55	1032.88	
337	nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]	Squared	Subtracted	28895.6	35572.8	6677.2	
337	paxillin. [source:swissprot;acc:p49023]	Rooted	Subtracted	59.4073	66.7002	7.2929	
337	source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm_178862]	Ranked	Subtracted	200.691	179.88	20.811	
338	60s ribosomal protein l12 like protein. [source:sptrembl;acc:o60886]	Ranked	Divided	243.583	267.528	1.0983	
338	homeobox protein hox-b4 (hox-2f) (hox-2.6). [source:swissprot;acc:p17483]	Measured	Divided	20446.1	24136.4	1.18049	
338	importin beta-1 subunit (karyopherin beta-1 subunit) (nuclear factor p97) (importin 90). [source:swissprot;acc:q14974]	Squared	Subtracted	28895.6	35572.8	6677.2	
338	kh domain-containing, rna-binding, signal transduction-associated protein 2; sam68-like mammalian protein 1. [source:refseq;acc:nm_152688]	Measured	Subtracted	1631.67	2664.55	1032.88	
338	mast cell carboxypeptidase a precursor (ec 3.4.17.1) (mc-cpa) (carboxypeptidase a3). [source:swissprot;acc:p15088]	Rooted	Divided	77.58	70.0181	1.108	
338	metastasis-associated protein mta1. [source:swissprot;acc:q13330]	Rooted	Subtracted	52.7557	60.035	7.2793	
338	oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]	Ranked	Subtracted	200.691	179.88	20.811	
338	zinc finger protein 40 (human immunodeficiency virus type i enhancer- binding protein 1) (hiv-ep1) (major histocompatibility complex binding protein 1) (mbp-1) (positive regulatory domain ii binding factor 1) (prdii-bf1). [source:swissprot;acc:p15822]	Squared	Divided	46785.7	58383.2	1.24789	
339	chromatin assembly factor 1 subunit c (caf-1 subunit c) (chromatin assembly factor i p48 subunit) (caf-i 48 kda subunit) (caf-ip48) (retinoblastoma binding protein p48) (retinoblastoma-binding protein 4) (rbbp-4) (msi1 protein homolog). [source:swissprot;acc:q09028]	Rooted	Subtracted	52.7936	60.0592	7.2656	
339	dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [source:sptrembl;acc:q9nq02]	Ranked	Divided	243.583	267.527	1.0983	
339	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]	Ranked	Subtracted	200.691	179.88	20.811	
339	homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]	Measured	Divided	20446.1	24136.4	1.18049	
339	human immunodeficiency virus type i enhancer-binding protein 2 (hiv-ep2). [source:swissprot;acc:p31629]	Squared	Divided	46785.7	58383.2	1.24789	
339	neuralized-like. [source:refseq;acc:nm_004210]	Measured	Subtracted	1657.68	2690.25	1032.57	
339	plasma carboxypeptidase b2 isoform a preproprotein; carboxypeptidase u; thrombin-activatable fibrinolysis inhibitor; carboxypeptidase b-like protein; thrombin-activable fibrinolysis inhibitor. [source:refseq;acc:nm_001872]	Rooted	Divided	77.5797	70.0179	1.108	
339	transducin beta-like 1x protein (transducin-beta-like 1, x-linked). [source:swissprot;acc:o60907]	Squared	Subtracted	28895.6	35572.8	6677.2	
340	28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]	Ranked	Subtracted	239.75	260.544	20.794	
340	homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]	Measured	Divided	20446.1	24136.4	1.18049	
340	myelin gene expression factor 2. [source:refseq;acc:nm_016132]	Ranked	Divided	235.383	258.476	1.09811	
340	nuclear matrix protein nmp200 related to splicing factor prp19. [source:refseq;acc:nm_014502]	Rooted	Divided	58.4926	64.8047	1.10791	
340	ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm_015713]	Squared	Divided	32117	40054	1.24713	
340	signal transducing adaptor molecule 2; stam-like protein containing sh3 and itam domains 2. [source:refseq;acc:nm_005843]	Measured	Subtracted	11743.3	10712.3	1031	
340	transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]	Rooted	Subtracted	45.7414	52.932	7.1906	
340	transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]	Squared	Subtracted	28895.6	35572.8	6677.2	
341	60s ribosomal protein l9. [source:swissprot;acc:p32969]	Ranked	Divided	240.243	263.798	1.09805	
341	acetyl-coa carboxylase 2 (ec 6.4.1.2) (acc-beta) [includes: biotin carboxylase (ec 6.3.4.14)]. [source:swissprot;acc:o00763]	Squared	Subtracted	31646.1	38288.7	6642.6	
341	homeobox protein hox-d4 (hox-4b) (hox-5.1) (hho.c13). [source:swissprot;acc:p09016]	Measured	Divided	20446.1	24136.4	1.18049	
341	lupus la protein (sjogren syndrome type b antigen) (ss-b) (la ribonucleoprotein) (la autoantigen). [source:swissprot;acc:p05455]	Rooted	Divided	51.9812	57.5858	1.10782	

Legend:
- Rank is the rank after comparing the two networks
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.