Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 1430 to 1479 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DUT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial precursor (ec 3.6.1.23) (dutpase) (dutp pyrophosphatase). [source:swissprot;acc:p33316]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
187.114\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.925\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02037\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAD23A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
uv excision repair protein rad23 homolog a (hhr23a). [source:swissprot;acc:p54725]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.987\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
225.468\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02028\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 4 (26s proteasome regulatory subunit s5a) (rpn10) (multiubiquitin chain binding protein) (antisecretory factor-1) (af) (asf). [source:swissprot;acc:p55036]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OCRL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inositol polyphosphate 5-phosphatase ocrl-1 (ec 3.1.3.36) (lowe's oculocerebrorenal syndrome protein). [source:swissprot;acc:q01968]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAD23B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
uv excision repair protein rad23 homolog b (hhr23b) (xp-c repair complementing complex 58 kda protein) (p58). [source:swissprot;acc:p54727]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin vi. [source:swissprot;acc:q9um54]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1436\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EVI5L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
similar to ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_145245]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.829\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
214.493\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02022\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1437\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EVI5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_005665]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1438\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PGGT1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
geranylgeranyl transferase type i beta subunit (ec 2.5.1.-) (type i protein geranyl-geranyltransferase beta subunit) (ggtase-i-beta). [source:swissprot;acc:p53609]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
225.039\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
229.573\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02015\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1439\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FADS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 3; linoleoyl-coa desaturase (delta-6-desaturase)-like 3; delta-6 fatty acid desaturase. [source:refseq;acc:nm\_021727]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMAD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mothers against decapentaplegic homolog 4 (smad 4) (mothers against dpp homolog 4) (deletion target in pancreatic carcinoma 4) (hsmad4). [source:swissprot;acc:q13485]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1441\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FADS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 2; linoleoyl-coa desaturase (delta-6-desaturase)-like 2; delta-6 fatty acid desaturase. [source:refseq;acc:nm\_004265]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1442\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1443\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GLUD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate dehydrogenase 2, mitochondrial precursor (ec 1.4.1.3) (gdh). [source:swissprot;acc:p49448]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
203.908\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
207.998\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02006\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1444\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GLUDP5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate dehydrogenase 1, mitochondrial precursor (ec 1.4.1.3) (gdh). [source:swissprot;acc:p00367]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1445\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PCF11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pre-mrna cleavage complex ii protein pcf11 (fragment). [source:swissprot;acc:o94913]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
134.233\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
136.922\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02003\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HSPB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heat shock 27 kda protein (hsp 27) (stress-responsive protein 27) (srp27) (estrogen-regulated 24 kda protein) (28 kda heat shock protein). [source:swissprot;acc:p04792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.817\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01989\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1447\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLE3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna polymerase epsilon p17 subunit (dna polymerase epsilon subunit 3) (chromatin accessibility complex 17) (huchrac17) (chrac-17). [source:swissprot;acc:q9nrf9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.854\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
255.842\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01988\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1448\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMPSTE24\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
caax prenyl protease 1 homolog (ec 3.4.24.-) (prenyl protein-specific endoprotease 1) (farnesylated-proteins converting enzyme 1) (face-1) (zinc metalloproteinase ste24 homolog). [source:swissprot;acc:o75844]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.532\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.117\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1449\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TNPO3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transportin-sr; importin 12. [source:refseq;acc:nm\_012470]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.305\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.766\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0198\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1450\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HSPB8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha crystallin c chain (small stress protein-like protein hsp22) (e2ig1) (protein kinase h11). [source:swissprot;acc:q9ujy1]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.804\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.194\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01979\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1451\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BOLA2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
my016 protein. [source:sptrembl;acc:q9h3k6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.755\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01978\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1452\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin-dependent kinases regulatory subunit 1 (cks-1) (sid1334) (pnas-16 / pnas-143). [source:swissprot;acc:p33551]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
160.381\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
163.554\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1453\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RTN4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
reticulon 4 (neurite outgrowth inhibitor) (nogo protein) (foocen) (neuroendocrine-specific protein) (nsp) (neuroendocrine specific protein c homolog) (rtn-x) (reticulon 5) (my043 protein). [source:swissprot;acc:q9nqc3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.038\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01976\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1454\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SAP18\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sin3 associated polypeptide p18 (2hor0202). [source:swissprot;acc:o00422]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
207.024\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.089\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01964\vspace{3pt}}\\\cline{1-3}\cline{5-6}
\parbox{\wcA}{\vspace{3pt}\noindent
1455\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EHD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eh-domain containing protein 1 (testilin) (hpast1). [source:swissprot;acc:q9h4m9]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
211.085\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01962\vspace{3pt}}}\\\cline{1-3}\cline{5-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1456\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EHD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eh-domain containing protein 4 (eh domain-containing protein fksg7) (hepatocellular carcinoma-associated protein 10/11). [source:swissprot;acc:q9h223]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
211.086\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1457\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EHD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eh-domain containing protein 2. [source:swissprot;acc:q9nzn4]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1458\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EHD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eh-domain containing protein 3. [source:swissprot;acc:q9nzn3]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1459\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSE1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin-alpha re-exporter (chromosome segregation 1-like protein) (cellular apoptosis susceptibility protein). [source:swissprot;acc:p55060]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
192.336\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01961\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1460\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TRIP12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thyroid receptor interacting protein 12 (trip12). [source:swissprot;acc:q14669]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.817\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.851\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0196\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1461\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RTN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
reticulon 1 (neuroendocrine-specific protein). [source:swissprot;acc:q16799]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.019\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.077\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1462\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DLSTP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (ec 2.3.1.61) (e2) (e2k). [source:swissprot;acc:p36957]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.817\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.851\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1463\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
pnas-18. [source:sptrembl;acc:q9bzu3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
161.056\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
164.211\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01959\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
1464\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
poly (adp-ribose) glycohydrolase. [source:refseq;acc:nm\_003631]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
217.351\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.18\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01957\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1465\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MTO1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mto1 protein homolog (cgi-02). [source:swissprot;acc:q9y2z2]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1466\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RTN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
reticulon protein 2 (neuroendocrine-specific protein-like 1) (nsp-like protein 1) (nspli). [source:swissprot;acc:o75298]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.022\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.073\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1467\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MPP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
maguk p55 subfamily member 2 (mpp2 protein) (discs, large homolog 2). [source:swissprot;acc:q14168]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.513\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232.983\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01956\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1468\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DRAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dr1-associated protein 1; negative cofactor 2 alpha; dr1-associated corepressor. [source:refseq;acc:nm\_006442]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.937\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01954\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1469\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RTN3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
reticulon protein 3 (neuroendocrine-specific protein-like 2) (nsp-like protein ii) (nsplii). [source:swissprot;acc:o95197]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.013\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0195\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1470\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
QARS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutaminyl-trna synthetase (ec 6.1.1.18) (glutamine--trna ligase) (glnrs). [source:swissprot;acc:p47897]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
221.412\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
217.199\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0194\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1471\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SRM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spermidine synthase (ec 2.5.1.16) (putrescine aminopropyltransferase) (spdsy). [source:swissprot;acc:p19623]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1472\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GARS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycyl-trna synthetase (ec 6.1.1.14) (glycine--trna ligase) (glyrs). [source:swissprot;acc:p41250]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1473\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EARS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamyl trna synthetase. [source:sptrembl;acc:o14563]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1474\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RANBP5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin beta-3 subunit (karyopherin beta-3 subunit) (ran-binding protein 5). [source:swissprot;acc:o00410]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.582\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.427\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01938\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1475\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KYNU\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kynureninase (ec 3.7.1.3) (l-kynurenine hydrolase). [source:swissprot;acc:q16719]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
181.882\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
178.438\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0193\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1476\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RANBP6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ran-gtp binding protein (fragment). [source:sptrembl;acc:o60518]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.591\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.457\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01928\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1477\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transformer-2 protein homolog (tra-2 alpha). [source:swissprot;acc:q13595]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.328\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.267\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01922\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1478\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SFRS10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
arginine/serine-rich splicing factor 10 (transformer-2-beta) (htra2- beta) (transformer 2 protein homolog) (silica-induced protein 41) (ra301). [source:swissprot;acc:q15815]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.122\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.066\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1479\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MPP6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
maguk p55 subfamily member 6 (veli-associated maguk 1) (vam-1). [source:swissprot;acc:q9nzw5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.469\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232.855\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0192\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/