Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the
value_type as 'ranked' since this provides a very robust analysis method.
intercation map as 'high confidence'
network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 3508 to 3557 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
877\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STARD13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
star-related lipid transfer protein 13 (stard13) (start domain- containing protein 13) (46h23.2). [source:swissprot;acc:q9y3m8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
878\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5797.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6391.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10243\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
LIPF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
triacylglycerol lipase, gastric precursor (ec 3.1.1.3) (gastric lipase) (gl). [source:swissprot;acc:p07098]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26955.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15975\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
STARD8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
star-related lipid transfer protein 8 (stard8) (start domain- containing protein 8). [source:swissprot;acc:q92502]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}}\\\cline{1-3}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
879\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CHRNA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-2 chain precursor. [source:swissprot;acc:q15822]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
LIPM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba304i5.1 (novel lipase) (fragment). [source:sptrembl;acc:q96lg2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26955.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15975\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUP88\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear pore complex protein nup88 (nucleoporin nup88) (88 kda nuclear pore complex protein). [source:swissprot;acc:q99567]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5797.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6391.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10243\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-1 subunit (ampk beta-1 chain) (ampkb). [source:swissprot;acc:q9y478]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
880\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
LIPA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lysosomal acid lipase/cholesteryl ester hydrolase precursor (ec 3.1.1.13) (lal) (acid cholesteryl ester hydrolase) (sterol esterase) (lipase a) (cholesteryl esterase). [source:swissprot;acc:p38571]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26955.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15975\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAPKAPK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitogen-activated protein kinase-activated protein kinase 3; mapkap kinase 3. [source:refseq;acc:nm\_004635]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MTRF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peptide chain release factor 1, mitochondrial precursor (mrf-1). [source:swissprot;acc:o75570]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5166.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5694.55\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1023\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-2 subunit (ampk gamma-2 chain) (ampk gamma2) (h91620p). [source:swissprot;acc:q9ugj0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
881\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp-ribosylation factor-like protein 7 (adp-ribosylation factor-like protein lak). [source:swissprot;acc:p56559]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5912.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6517.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10229\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAPK14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitogen-activated protein kinase 14 (ec 2.7.1.37) (mitogen-activated protein kinase p38alpha) (map kinase p38alpha) (cytokine suppressive anti-inflammatory drug binding protein) (csaid binding protein) (csbp) (max-interacting protein 2) (map kinase mxi2) (sapk2a). [source:swissprot;acc:q16539]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYCL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
l-myc-1 proto-oncogene protein. [source:swissprot;acc:p12524]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.604\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03928\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SARS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
seryl-trna synthetase, mitochondrial precursor (ec 6.1.1.11) (serine--trna ligase) (serrsmt). [source:swissprot;acc:q9np81]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26955.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15975\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
882\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V0D1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit d (ec 3.6.3.14) (v-atpase d subunit) (vacuolar proton pump d subunit) (v-atpase ac39 subunit) (v-atpase 40 kda accessory protein) (p39) (32 kda accessory protein). [source:swissprot;acc:p12953]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5912.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6517.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10229\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHRNA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-4 chain precursor. [source:swissprot;acc:p43681]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYCN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
n-myc proto-oncogene protein. [source:swissprot;acc:p04198]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.601\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.008\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03924\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SARS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
seryl-trna synthetase (ec 6.1.1.11) (serine--trna ligase) (serrs). [source:swissprot;acc:p49591]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26955.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15975\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
883\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARL4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp-ribosylation factor-like protein 4. [source:swissprot;acc:p40617]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5912.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6517.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10229\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHRNA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-3 chain precursor. [source:swissprot;acc:p32297]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABPA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ga binding protein alpha chain (gabp-alpha subunit) (transcription factor e4tf1-60) (nuclear respiratory factor-2 subunit alpha). [source:swissprot;acc:q06546]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.017\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03917\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PARK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
parkinson disease (autosomal recessive, juvenile) 2, parkin isoform 1; parkin. [source:refseq;acc:nm\_004562]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
884\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ga binding protein beta-2 chain (gabp-beta-2 subunit) (transcription factor e4tf1-47) (gapbp-2) (nuclear respiratory factor-2 subunit gamma). [source:swissprot;acc:q06545]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.017\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03917\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
hepatoma-derived growth factor-related protein 2. [source:refseq;acc:nm\_032631]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MPDU1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannose-p-dolichol utilization defect 1 protein (suppressor of lec15 and lec35 glycosylation mutation homolog) (sl15). [source:swissprot;acc:o75352]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5167.15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5695.44\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10224\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SPHK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sphingosine kinase 2 (ec 2.7.1.-) (sk 2) (spk 2). [source:swissprot;acc:q9nra0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.6378\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89.8201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06123\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
885\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cgi-142; hepatoma-derived growth factor 2. [source:refseq;acc:nm\_016073]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
JUP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junction plakoglobin (desmoplakin iii). [source:swissprot;acc:p14923]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.6175\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.3272\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0612\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MTRF1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial translational release factor 1-like. [source:refseq;acc:nm\_019041]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5168.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5696.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10219\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFS8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 23 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-23kd) (ci-23kd) (tyky subunit). [source:swissprot;acc:o00217]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.017\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03917\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
886\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tax interaction protein 1. [source:refseq;acc:nm\_014604]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.6175\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.3272\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0612\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ELOVL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
elongation of very long chain fatty acids protein 1 (cgi-88). [source:swissprot;acc:q9bw60]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.018\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03917\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pc4 and sfrs1 interacting protein 2; pc4 and sfrs1 interacting protein 1; transcriptional coactivator p52/p75. [source:refseq;acc:nm\_033222]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
upstream binding protein 1 (lbp-1a). [source:refseq;acc:nm\_014517]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5903.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6506.32\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10217\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
887\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDC25A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
m-phase inducer phosphatase 1 (ec 3.1.3.48) (dual specificity phosphatase cdc25a). [source:swissprot;acc:p30304]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6944\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.7281\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06105\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l8. [source:swissprot;acc:p25120]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TBL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin beta-like 3; wd-repeat protein sazd. [source:refseq;acc:nm\_006453]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
244.155\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
234.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03913\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFCP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor cp2; transcription factor cp2, alpha globin. [source:refseq;acc:nm\_005653]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5903.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6506.32\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10217\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
888\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nascent-polypeptide-associated complex alpha polypeptide. [source:refseq;acc:nm\_005594]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.027\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
204.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03909\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GSTT2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7827\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.2401\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06089\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HDGF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hepatoma-derived growth factor (hdgf) (high-mobility group protein 1- like 2) (hmg-1l2). [source:swissprot;acc:p51858]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFCP2L1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lbp-9. [source:refseq;acc:nm\_014553]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5903.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6506.32\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10217\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
889\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha-nac protein. [source:sptrembl;acc:q9h009]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.028\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
204.053\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03908\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HDGFL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pwwp domain containing 1; hdgf (hepatoma-derived growth factor) like. [source:refseq;acc:nm\_138574]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PAOX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal n1-acetyl-spermine/spermidine oxidase. [source:refseq;acc:nm\_152911]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7817\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.2368\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06085\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SFRS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor, arginine/serine-rich 3 (pre-mrna splicing factor srp20) (x16 protein). [source:swissprot;acc:p23152]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5903.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6506.32\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10217\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
890\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATPIF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atpase inhibitor, mitochondrial precursor. [source:swissprot;acc:q9uii2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7818\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.2369\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06085\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/