MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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description	Network Comparison Type	Rank	Gene	Hugo	Value Type	Interaction Map	Filtered	network_comparison	red	green

Results: HTML CSV LaTeX

Showing element 1225 to 1274 of 16578 in total

Value Type  : Ranked
Filtered  : 1

description	Network Comparison Type	Rank	Hugo	Interaction Map	network_comparison	red	green
alpha-2 catenin (alpha-catenin related protein) (alpha n-catenin). [swissprot;acc:p26232]	Divided	3165	CTNNA2	Low confidence	1.01619	202.715	199.486
	Subtracted	3138			3.229
alpha-2-macroglobulin receptor-associated protein precursor (alpha-2-mrap) (low density lipoprotein receptor-related protein- associated protein 1) (rap). [swissprot;acc:p30533]	Divided	1332	LRPAP1		1.02215	203.765	199.349
	Subtracted	1283			4.416
alpha-actinin 1 (alpha-actinin cytoskeletal isoform) (non-muscle alpha-actinin 1) (f-actin cross linking protein). [swissprot;acc:p12814]	Divided	1806	ACTN1	High confidence	1.01178	217.009	214.482
		4748		Low confidence	1.00528	204.297	203.223
	Subtracted	1791		High confidence	2.527	217.009	214.482
		4721		Low confidence	1.074	204.297	203.223
alpha-actinin 2 (alpha actinin skeletal muscle isoform 2) (f-actin cross linking protein). [swissprot;acc:p35609]	Divided	1799	ACTN2	High confidence	1.01182	217.016	214.481
		4762		Low confidence	1.00497	204.331	203.321
	Subtracted	1787		High confidence	2.535	217.016	214.481
		4762		Low confidence	1.01	204.331	203.321
alpha-actinin 4 (non-muscle alpha-actinin 4) (f-actin cross linking protein). [swissprot;acc:o43707]	Divided	1805	ACTN4	High confidence	1.01178	217.008	214.482
		4751		Low confidence	1.0052	204.3	203.243
	Subtracted	1792		High confidence	2.526	217.008	214.482
		4728		Low confidence	1.057	204.3	203.243
alpha-aminoadipate aminotransferase; l-kynurenine/alpha-aminoadipate aminotransferase; kynurenine aminotransferase ii. [refseq;acc:nm_016228]	Divided	988	AADAT		1.02459	186.556	182.079
	Subtracted	1238			4.477
alpha-amylase, salivary precursor (ec 3.2.1.1) (1,4-alpha-d-glucan glucanohydrolase). [swissprot;acc:p04745]	Divided	282	AMY1C		1.04391	219.742	210.498
		3914	no value		1.01258	207.449	204.872
	Subtracted	250	AMY1C		9.244	219.742	210.498
		3858	no value		2.577	207.449	204.872
alpha-centractin (centractin) (centrosome-associated actin homolog) (actin-rpv) (arp1). [swissprot;acc:p42024]	Divided	1509	ACTR1A	High confidence	1.01795	225.148	221.177
		3622		Low confidence	1.01423	198.731	195.943
	Subtracted	1481		High confidence	3.971	225.148	221.177
		3656		Low confidence	2.788	198.731	195.943
alpha-fetoprotein enhancer binding protein (at motif-binding factor) (at-binding transcription factor 1). [swissprot;acc:q15911]	Divided	2075	ZFHX3		1.01929	201.219	197.41
		2255		High confidence	1.00595	202.366	203.57
	Subtracted	2063		Low confidence	3.809	201.219	197.41
		2257		High confidence	1.204	202.366	203.57
alpha-mannosidase 2c1 (ec 3.2.1.24) (alpha-d-mannoside mannohydrolase) (mannosidase alpha class 2c member 1) (alpha mannosidase 6a8b). [swissprot;acc:q9ntj4]	Divided	1823	MAN2C1	Low confidence	1.02002	202.662	198.685
	Subtracted	1765			3.977
alpha-methylacyl-coa racemase (ec 5.1.99.4) (2-methylacyl-coa racemase). [swissprot;acc:q9uhk6]	Divided	4015	C1QTNF3		1.0116	201.679	199.366
	Subtracted	4009			2.313
alpha-n-acetylgalactosaminidase precursor (ec 3.2.1.49) (alpha- galactosidase b). [swissprot;acc:p17050]	Divided	3228	no value		1.01595	204.526	201.316
	Subtracted	3174			3.21
alpha-n-acetylglucosaminidase precursor (ec 3.2.1.50) (n-acetyl-alpha- glucosaminidase) (nag). [swissprot;acc:p54802]	Divided	2393	NAGLU		1.0185	211.07	207.237
	Subtracted	2020			3.833
alpha-nac protein. [sptrembl;acc:q9h009]	Divided	889	no value	High confidence	1.03908	212.028	204.053
		2026		Low confidence	1.01942	199.011	195.219
	Subtracted	900		High confidence	7.975	212.028	204.053
		2096		Low confidence	3.792	199.011	195.219
alpha-parvin (calponin-like integrin-linked kinase binding protein) (ch-ilkbp). [swissprot;acc:q9nvd7]	Divided	1249		High confidence	1.02437	219.354	224.7
		2796		Low confidence	1.01731	201.856	198.422
	Subtracted	1188		High confidence	5.346	219.354	224.7
		2755		Low confidence	3.434	201.856	198.422
alpha-soluble nsf attachment protein (snap-alpha) (n-ethylmaleimide- sensitive factor attachment protein, alpha). [swissprot;acc:p54920]	Divided	812	NAPA	High confidence	1.04425	212.386	221.785
		3626		Low confidence	1.01421	203.045	200.2
	Subtracted	800		High confidence	9.399	212.386	221.785
		3614		Low confidence	2.845	203.045	200.2

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.