Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Filtered Interaction Map red green network_comparison
    Results: HTML CSV LaTeX Showing element 13 to 62 of 502 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Filtered: 0
    Interaction Map: High confidence
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
heat shock 70 kda protein 1 (hsp70.1) (hsp70-1/hsp70-2). [source:swissprot;acc:p08107]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9264.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.77804\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
14\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
dystrophin. [source:swissprot;acc:p11532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10232.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18054.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.76446\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
15\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19403\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11267\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.72211\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
16\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CCNH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin h (mo15-associated protein) (p37) (p34). [source:swissprot;acc:p51946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12170.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20670.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.69839\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
17\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11543\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.69451\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
18\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
22286\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
13216\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.68629\vspace{3pt}}}\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
19\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&&&\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
20\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
21\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACRC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6313.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10621.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.68236\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
22\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PNPO\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pyridoxine 5'-phosphate oxidase. [source:refseq;acc:nm\_018129]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20989\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12479\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.68195\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
23\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HGS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hepatocyte growth factor-regulated tyrosine kinase substrate; human growth factor-regulated tyrosine kinase substrate. [source:refseq;acc:nm\_004712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15520.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9285.44\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.67148\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
24\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
13730.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
8257\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.66289\vspace{3pt}}}\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
25\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DTNBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12128.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7533.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.60995\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
27\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ptd016 protein. [source:refseq;acc:nm\_016125]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18050\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11234\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.60673\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ING5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
p28 ing5. [source:refseq;acc:nm\_032329]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12124.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7562.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.60337\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
29\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PNMT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phenylethanolamine n-methyltransferase (ec 2.1.1.28) (pnmtase) (noradrenaline n-methyltransferase). [source:swissprot;acc:p11086]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7395\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
11625\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.57201\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
30\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
31\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LRRFIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
leucine rich repeat (in flii) interacting protein 1. [source:refseq;acc:nm\_004735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8082.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5266.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.53462\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
32\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
13292.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
8691.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.52929\vspace{3pt}}}\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
33\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
34\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MAPRE2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microtubule-associated protein, rp/eb family, member 2; t-cell activation protein, eb1 family; apc-binding protein eb1. [source:refseq;acc:nm\_014268]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11284\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17173.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.52196\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
35\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3208.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4871.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.5182\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
36\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNB1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14964\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.4984\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
37\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3859\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2582\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.49458\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
38\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDK8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7230\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10771\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.48976\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
39\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20536\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.48242\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
40\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3845\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.48218\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
41\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9994.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6758.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.47871\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
42\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8158\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5530.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.47509\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
43\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GSTT2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12143.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8356.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.4533\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
44\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SERPINB12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14604.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21138.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.44743\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14592\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21113.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.44694\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
46\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l37a. [source:swissprot;acc:p12751]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
12941.7\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
18499.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.42943\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
47\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYP27B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
25-hydroxyvitamin d-1 alpha hydroxylase, mitochondrial precursor (ec 1.14.-.-) (25-ohd-1 alpha-hydroxylase) (25-hydroxyvitamin d3 1- alpha-hydroxylase) (vd3 1a hydroxylase) (p450c1 alpha) (p450vd1- alpha). [source:swissprot;acc:o15528]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
48\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFA5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 13 kda-b subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-b) (ci-13kd-b) (complex i subunit b13). [source:swissprot;acc:q16718]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9830\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6909\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.42278\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
49\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
brain protein 16. [source:refseq;acc:nm\_016458]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6890.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4854.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.41927\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
50\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
COMP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cartilage oligomeric matrix protein precursor (comp). [source:swissprot;acc:p49747]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9249.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13091.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.41533\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
51\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KPNA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin alpha-2 subunit (karyopherin alpha-2 subunit) (srp1-alpha) (rag cohort protein 1). [source:swissprot;acc:p52292]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7168\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5102\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.40494\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
52\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARIH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ariadne-2 protein homolog (ari-2) (triad1 protein) (ht005). [source:swissprot;acc:o95376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
3284\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
4554.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.38688\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
53\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2-18 kda ubch7 (ec 6.3.2.19) (ubiquitin- protein ligase) (ubiquitin carrier protein) (ubcm4) (e2-f1) (l-ubc). [source:swissprot;acc:p51966]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
54\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STX10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13884.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19014.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.36949\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
55\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZNF547\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
22440\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
16388\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.36929\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
56\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
57\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDC37\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hsp90 co-chaperone cdc37 (hsp90 chaperone protein kinase-targeting subunit) (p50cdc37). [source:swissprot;acc:q16543]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8152.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11134.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.36581\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
58\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX43\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dead-box protein. [source:refseq;acc:nm\_018665]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10628.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14486\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.36296\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
59\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GLUD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate dehydrogenase 2, mitochondrial precursor (ec 1.4.1.3) (gdh). [source:swissprot;acc:p49448]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15863.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11662.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.36025\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
60\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNPDA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glucosamine-6-phosphate isomerase (ec 3.5.99.6) (glucosamine-6- phosphate deaminase) (gnpda) (glcn6p deaminase) (oscillin). [source:swissprot;acc:p46926]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11761\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15924\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.35397\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
61\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRISP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
testis-specific protein tpx-1 precursor (cysteine-rich secretory protein-2) (crisp-2). [source:swissprot;acc:p16562]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15352\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11346.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.35302\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
62\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GLRA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycine receptor alpha-3 chain precursor. [source:swissprot;acc:o75311]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9418.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12695.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.34791\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/