Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

  • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Filtered Interaction Map red green network_comparison
    Results: HTML CSV LaTeX Showing element 13 to 62 of 502 in total
    Value Type: Ranked
    Network Comparison Type: Divided
    Filtered: 0
    Interaction Map: High confidence
    \def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 13\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent heat shock 70 kda protein 1 (hsp70.1) (hsp70-1/hsp70-2). [source:swissprot;acc:p08107]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5210.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9264.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.77804\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 14\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent dystrophin. [source:swissprot;acc:p11532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10232.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 18054.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.76446\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 15\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 19403\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11267\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.72211\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 16\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CCNH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cyclin h (mo15-associated protein) (p37) (p34). [source:swissprot;acc:p51946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12170.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 20670.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.69839\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 17\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11543\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.69451\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 18\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 22286\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 13216\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.68629\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 19\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&&&\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 20\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 21\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ACRC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6313.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10621.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.68236\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 22\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PNPO\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent pyridoxine 5'-phosphate oxidase. [source:refseq;acc:nm\_018129]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 20989\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12479\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.68195\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 23\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent HGS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent hepatocyte growth factor-regulated tyrosine kinase substrate; human growth factor-regulated tyrosine kinase substrate. [source:refseq;acc:nm\_004712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 15520.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9285.44\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.67148\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 24\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 13730.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 8257\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.66289\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 25\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 26\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent DTNBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12128.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7533.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60995\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 27\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ptd016 protein. [source:refseq;acc:nm\_016125]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 18050\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11234\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60673\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ING5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent p28 ing5. [source:refseq;acc:nm\_032329]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12124.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7562.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60337\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 29\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PNMT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent phenylethanolamine n-methyltransferase (ec 2.1.1.28) (pnmtase) (noradrenaline n-methyltransferase). [source:swissprot;acc:p11086]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7395\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 11625\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.57201\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 30\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 31\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent LRRFIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent leucine rich repeat (in flii) interacting protein 1. [source:refseq;acc:nm\_004735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8082.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5266.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.53462\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 32\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 13292.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 8691.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.52929\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 33\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 34\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MAPRE2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent microtubule-associated protein, rp/eb family, member 2; t-cell activation protein, eb1 family; apc-binding protein eb1. [source:refseq;acc:nm\_014268]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11284\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 17173.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.52196\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 35\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3208.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4871.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.5182\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 36\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GNB1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 22422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 14964\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.4984\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 37\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3859\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 2582\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.49458\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 38\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CDK8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7230\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10771\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48976\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 39\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 13853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 20536\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48242\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 40\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3845\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48218\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 41\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent 60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9994.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6758.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.47871\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 42\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent SLC25A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8158\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5530.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.47509\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 43\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GSTT2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12143.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 8356.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.4533\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 44\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent SERPINB12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 14604.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21138.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.44743\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 14592\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21113.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.44694\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 46\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent 60s ribosomal protein l37a. [source:swissprot;acc:p12751]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 12941.7\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 18499.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.42943\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 47\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CYP27B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 25-hydroxyvitamin d-1 alpha hydroxylase, mitochondrial precursor (ec 1.14.-.-) (25-ohd-1 alpha-hydroxylase) (25-hydroxyvitamin d3 1- alpha-hydroxylase) (vd3 1a hydroxylase) (p450c1 alpha) (p450vd1- alpha). [source:swissprot;acc:o15528]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 48\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent NDUFA5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nadh-ubiquinone oxidoreductase 13 kda-b subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-b) (ci-13kd-b) (complex i subunit b13). [source:swissprot;acc:q16718]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9830\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6909\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.42278\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 49\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent brain protein 16. [source:refseq;acc:nm\_016458]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6890.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4854.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.41927\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 50\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent COMP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cartilage oligomeric matrix protein precursor (comp). [source:swissprot;acc:p49747]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9249.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 13091.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.41533\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 51\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent KPNA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent importin alpha-2 subunit (karyopherin alpha-2 subunit) (srp1-alpha) (rag cohort protein 1). [source:swissprot;acc:p52292]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7168\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5102\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.40494\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 52\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ARIH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ariadne-2 protein homolog (ari-2) (triad1 protein) (ht005). [source:swissprot;acc:o95376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3284\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 4554.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.38688\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 53\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ubiquitin-conjugating enzyme e2-18 kda ubch7 (ec 6.3.2.19) (ubiquitin- protein ligase) (ubiquitin carrier protein) (ubcm4) (e2-f1) (l-ubc). [source:swissprot;acc:p51966]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 54\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent STX10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 13884.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 19014.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.36949\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 55\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ZNF547\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 22440\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 16388\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.36929\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 56\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 57\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CDC37\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent hsp90 co-chaperone cdc37 (hsp90 chaperone protein kinase-targeting subunit) (p50cdc37). [source:swissprot;acc:q16543]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8152.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11134.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.36581\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 58\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent DDX43\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent dead-box protein. [source:refseq;acc:nm\_018665]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10628.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 14486\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.36296\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 59\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GLUD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glutamate dehydrogenase 2, mitochondrial precursor (ec 1.4.1.3) (gdh). [source:swissprot;acc:p49448]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 15863.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11662.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.36025\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 60\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GNPDA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glucosamine-6-phosphate isomerase (ec 3.5.99.6) (glucosamine-6- phosphate deaminase) (gnpda) (glcn6p deaminase) (oscillin). [source:swissprot;acc:p46926]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11761\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 15924\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.35397\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 61\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CRISP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent testis-specific protein tpx-1 precursor (cysteine-rich secretory protein-2) (crisp-2). [source:swissprot;acc:p16562]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 15352\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11346.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.35302\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 62\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GLRA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glycine receptor alpha-3 chain precursor. [source:swissprot;acc:o75311]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9418.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12695.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.34791\vspace{3pt}}\\\hline nd{longtable}
    Legend:
    - Rank is the rank after comparing the two networks
    - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    - Hugo is the HGNC identifier if it exists
    - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    - Filtered specifies whether we only included the high confidence microarry measurements or not.

    - http://analysis.yellowcouch.org/