Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 1351 to 1400 of 16578 in total 
    Value Type: Ranked
    Filtered: 1
    
\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
338\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
STT3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.691\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
179.88\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.811\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TXNL4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.572\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.86\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03958\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
339\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [source:sptrembl;acc:q9nq02]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
243.583\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.527\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0983\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BICD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bicaudal d homolog 1; bicaudal-d, drosophila, homolog of, 1. [source:refseq;acc:nm\_001714]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.616\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.878\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.738\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DDOST\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.691\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
179.88\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.811\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GGPS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
geranylgeranyl pyrophosphate synthetase (ggpp synthetase) (ggppsase) (geranylgeranyl diphosphate synthase) [includes: dimethylallyltransferase (ec 2.5.1.1); geranyltranstransferase (ec 2.5.1.10); farnesyltranstransferase (ec 2.5.1.29)]. [source:swissprot;acc:o95749]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
209.518\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
201.554\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03951\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
340\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BET1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
blocked early in transport 1 homolog (s. cerevisiae) like; golgi snare 15 kda protein. [source:refseq;acc:nm\_016526]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
201.827\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.178\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03939\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPS9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
239.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
260.544\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.794\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYEF2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myelin gene expression factor 2. [source:refseq;acc:nm\_016132]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
235.383\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
258.476\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09811\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFIP11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.616\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.878\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.738\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
341\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l9. [source:swissprot;acc:p32969]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
240.243\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
263.798\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09805\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kv channel interacting protein 1; vesicle apc-binding protein; a-type potassium channel modulatory protein 1. [source:refseq;acc:nm\_014592]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
214.027\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
222.415\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03919\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
192.088\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
184.374\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.714\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UQCRFSL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (ec 1.10.2.2) (rieske iron-sulfur protein) (risp). [source:swissprot;acc:p47985]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
240.788\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
261.416\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.628\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
342\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tho complex 3. [source:refseq;acc:nm\_032361]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
186.383\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
179.374\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03907\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GALE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
udp-glucose 4-epimerase (ec 5.1.3.2) (galactowaldenase) (udp- galactose 4-epimerase). [source:swissprot;acc:q14376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
200.249\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
192.535\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.714\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
240.913\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
261.45\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.537\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPS20\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
243.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.21\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09737\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
343\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GIPC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rgs19-interacting protein 1 (gaip c-terminus interacting protein gipc) (rgs-gaip interacting protein) (tax interaction protein 2) (tip-2). [source:swissprot;acc:o14908]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
231.73\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
211.252\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.478\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNIP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
potassium channel-interacting protein 4 isoform 4; calsenilin-like protein. [source:refseq;acc:nm\_147183]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
213.982\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
222.326\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03899\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRMT3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein arginine n-methyltransferase 3 (ec 2.1.1.-) (fragment). [source:swissprot;acc:o60678]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.625\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.136\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0973\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TXNL4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.572\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.86\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.712\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
344\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s2 (s4) (llrep3 protein). [source:swissprot;acc:p15880]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.625\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.136\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0973\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CDKL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine-protein kinase kkialre (ec 2.7.1.-) (cyclin-dependent kinase-like 1). [source:swissprot;acc:q00532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.873\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.181\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.692\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL44\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l44. [source:refseq;acc:nm\_022915]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
216.283\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
208.173\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03896\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase i 135 kda polypeptide (ec 2.7.7.6) (rna polymerase i subunit 2) (rpa135). [source:swissprot;acc:q9h9y6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
240.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
261.041\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.441\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
345\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
224.445\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
204.044\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.401\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CMPK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ump-cmp kinase (ec 2.7.4.14) (cytidylate kinase) (deoxycytidylate kinase) (cytidine monophosphate kinase). [source:swissprot;acc:p30085]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 2 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 2) (ppt-2) (g14). [source:swissprot;acc:q9umr5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
214.628\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
222.301\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.673\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNIP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kv channel interacting protein 2 isoform 4; a-type potassium channel modulatory protein 2; cardiac voltage gated potassium channel modulatory subunit. [source:refseq;acc:nm\_173193]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
213.976\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
222.312\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03896\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
346\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
COG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
conserved oligomeric golgi complex component 3 (vesicle docking protein sec34 homolog) (p94). [source:swissprot;acc:q96jb2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
206.433\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
198.781\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.652\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DYNC1I2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dynein intermediate chain 2, cytosolic (dh ic-2) (cytoplasmic dynein intermediate chain 2). [source:swissprot;acc:q13409]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
209.221\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
201.38\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03894\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s3. [source:swissprot;acc:p23396]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.612\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.119\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SHROOM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
apical-like protein (apxl protein). [source:swissprot;acc:q13796]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
231.492\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
211.136\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.356\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
347\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gtp:amp phosphotransferase mitochondrial (ec 2.7.4.10) (ak3) (adenylate kinase 3 alpha like 1). [source:swissprot;acc:q9uij7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BET1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
blocked early in transport 1 homolog (s. cerevisiae) like; golgi snare 15 kda protein. [source:refseq;acc:nm\_016526]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.827\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
194.178\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.649\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NME7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleoside diphosphate kinase 7 (ec 2.7.4.6) (ndk 7) (ndp kinase 7) (nm23-h7). [source:swissprot;acc:q9y5b8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
210.796\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
202.935\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03874\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SHROOM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
shroom-related protein; f-actin-binding protein; likely ortholog of mouse shroom. [source:refseq;acc:nm\_020859]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
231.481\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
211.131\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.35\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
348\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p27144]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligopeptide transporter, kidney isoform (peptide transporter 2) (kidney h+/peptide cotransporter) (solute carrier family 15, member 2). [source:swissprot;acc:q16348]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
185.969\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
165.623\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.346\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SPG20\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spartin; trans-activated by hepatitis c virus core protein 1. [source:refseq;acc:nm\_015087]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
210.796\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
202.935\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03874\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TRAPPC3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bet3 homolog. [source:swissprot;acc:o43617]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
197.221\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
189.574\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.647\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
349\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
AP2A2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
adapter-related protein complex 2 alpha 2 subunit (alpha-adaptin c) (clathrin assembly protein complex 2 alpha-c large chain) (100 kda coated vesicle protein c) (plasma membrane adaptor ha2/ap2 adaptin alpha c subunit) (huntingtin-interacting protein hypj). [source:swissprot;acc:o94973]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
204.762\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
197.135\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03869\vspace{3pt}}\\\cline{4-4}\cline{8-8}
&&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&&\parbox{\wcH}{\vspace{3pt}\noindent
7.627\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CEBPZ\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
255.112\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
234.804\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.308\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MED22\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
surfeit locus protein 5. [source:swissprot;acc:q15528]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
350\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [source:swissprot;acc:q13888]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
20.163\vspace{3pt}}\\\cline{2-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
PUF60\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
fuse-binding protein-interacting repressor isoform b; siah binding protein 1; pyrimidine tract binding splicing factor; ro ribonucleoprotein-binding protein 1; poly-u binding splicing factor puf60. [source:refseq;acc:nm\_014281]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
204.762\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
197.135\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.03869\vspace{3pt}}\\\cline{4-4}\cline{8-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcH}{\vspace{3pt}\noindent
7.627\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SCAPER\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 291. [source:swissprot;acc:q9by12]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/