Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 2650 to 2699 of 3228 in total 
    Value Type: Ranked
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2650\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KHSRP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kh-type splicing regulatory protein (fuse binding protein 2); kh-type splicing regulatory protein (fuse-binding protein 2). [source:refseq;acc:nm\_003685]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.188\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.942\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00113\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2651\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NFKBIE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nf-kappab inhibitor epsilon (nf-kappa-bie) (i-kappa-b-epsilon) (ikappabepsilon) (ikb-epsilon) (ikbe). [source:swissprot;acc:o00221]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.594\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00111\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2652\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NFKB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear factor nf-kappa-b p105 subunit (dna-binding factor kbf1) (ebp- 1) [contains: nuclear factor nf-kappa-b p50 subunit]. [source:swissprot;acc:p19838]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.451\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.673\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0011\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2653\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NFKBIB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nf-kappab inhibitor beta (nf-kappa-bib) (i-kappa-b-beta) (ikappabbeta) (ikb-beta) (ikb-b) (thyroid receptor interacting protein 9) (tr- interacting protein 9). [source:swissprot;acc:q15653]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
201.452\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
201.674\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2654\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NFKB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear factor nf-kappa-b p100/p49 subunits (h2tf1) (oncogene lyt-10) (lyt10) [contains: nuclear factor nf-kappa-b p52 subunit]. [source:swissprot;acc:q00653]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2655\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
b-cell lymphoma 3-encoded protein (bcl-3 protein). [source:swissprot;acc:p20749]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.445\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.667\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2656\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FUBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
far upstream element-binding protein; far upstream element binding protein; fuse-binding protein. [source:refseq;acc:nm\_003902]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.179\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.943\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00109\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2657\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DLG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
channel associated protein of synapse-110 (chapsyn-110) (discs, large homolog 2). [source:swissprot;acc:q15700]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.934\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
216.7\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00108\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2658\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DLG4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
presynaptic density protein 95 (psd-95) (discs, large homolog 4) (postsynaptic density-95). [source:swissprot;acc:p78352]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
216.933\vspace{3pt}}}&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2659\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DLG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
presynaptic protein sap102 (synapse-associated protein 102) (neuroendocrine-dlg) (ne-dlg) (discs, large homolog 3). [source:swissprot;acc:q92796]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2660\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DLG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
presynaptic protein sap97 (synapse-associated protein 97) (discs, large homolog 1) (hdlg). [source:swissprot;acc:q12959]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.937\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.704\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2661\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FES\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fes/fps (ec 2.7.1.112) (c-fes). [source:swissprot;acc:p07332]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
204.768\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
204.549\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00107\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2662\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MOCS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
molybdenum cofactor synthesis protein 2 large subunit (molybdopterin synthase large subunit) (mpt synthase large subunit) (mocs2b) (moco1- b). [source:swissprot;acc:o96007]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2663\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANAPC10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
anaphase-promoting complex subunit 10; anaphase-promoting complex 10. [source:refseq;acc:nm\_014885]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2664\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL29\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l29 (cell surface heparin binding protein hip). [source:swissprot;acc:p47914]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2665\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FER\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fer (ec 2.7.1.112) (p94-fer) (c-fer). [source:swissprot;acc:p16591]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2666\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TXNDC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thioredoxin domain containing; thioredoxin-related transmembrane protein; thioredoxin domain-containing. [source:refseq;acc:nm\_030755]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.136\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.911\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2667\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MOCS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
molybdenum cofactor synthesis protein 3 (molybdopterin synthase sulfurylase) (mpt synthase sulfurylase). [source:swissprot;acc:o95396]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.768\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.549\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2668\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FUBP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fuse binding protein 3 (fragment). [source:sptrembl;acc:q92946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.176\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.944\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2669\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GPD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycerol-3-phosphate dehydrogenase [nad+], cytoplasmic (ec 1.1.1.8) (gpd-c) (gpdh-c). [source:swissprot;acc:p21695]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.575\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.354\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00103\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2670\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KRAS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transforming protein p21a (k-ras 2a) (ki-ras) (c-k-ras). [source:swissprot;acc:p01116]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.391\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
144.538\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00102\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2671\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNPNAT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
similar to glucosamine-phosphate n-acetyltransferase (hypothetical protein flj33258). [source:sptrembl;acc:q96ek6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.288\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.067\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2672\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCAT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, cytosolic (ec 2.6.1.42) (bcat(c)) (eca39 protein). [source:swissprot;acc:p54687]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.957\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.741\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2673\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAD9A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad9 homolog; cell cycle checkpoint control protein; rad9 homolog (s. pombe). [source:refseq;acc:nm\_004584]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.372\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.588\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.001\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2674\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GLUL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamine synthetase (ec 6.3.1.2) (glutamate--ammonia ligase). [source:swissprot;acc:p15104]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
203.151\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.948\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2675\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPS26\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [source:swissprot;acc:q9byn8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
214.893\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
215.108\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2676\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ERH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
enhancer of rudimentary homolog. [source:swissprot;acc:q14259]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2677\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SHOC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
leucine-rich repeat protein shoc-2 (ras-binding protein sur-8). [source:swissprot;acc:q9uq13]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.412\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
144.553\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00098\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2678\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 2 (ralgds-like factor) (ras-associated protein rab2l). [source:swissprot;acc:o15211]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.411\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
144.552\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2679\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANAPC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
anaphase-promoting complex subunit 2; anaphase-promoting complex 2. [source:refseq;acc:nm\_013366]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
190.142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
189.959\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00096\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2680\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HRAS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transforming protein p21/h-ras-1 (c-h-ras). [source:swissprot;acc:p01112]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
144.56\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2681\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OTUB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-specific protease otubain 2. [source:refseq;acc:nm\_023112]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
203.592\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.787\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2682\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transforming protein n-ras. [source:swissprot;acc:p01111]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
144.427\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
144.564\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00095\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2683\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
YBX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclease sensitive element binding protein 1 (y box binding protein-1) (y-box transcription factor) (yb-1) (ccaat-binding transcription factor i subunit a) (cbf-a) (enhancer factor i subunit a) (efi-a) (dna-binding protein b) (dbpb). [source:swissprot;acc:p16991]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
208.438\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
208.635\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2684\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSDA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-binding protein a (cold shock domain protein a) (single-strand dna binding protein nf-gmb). [source:swissprot;acc:p16989]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2685\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
YBX2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
germ cell specific y-box binding protein; contrin. [source:refseq;acc:nm\_015982]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2686\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMB7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proteasome subunit beta type 7 precursor (ec 3.4.25.1) (proteasome subunit z) (macropain chain z) (multicatalytic endopeptidase complex chain z). [source:swissprot;acc:q99436]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.829\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.629\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00091\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2687\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCAT2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, mitochondrial precursor (ec 2.6.1.42) (bcat(m)) (placental protein 18) (pp18). [source:swissprot;acc:o15382]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.939\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.755\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00087\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2688\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal 3,2-trans-enoyl-coa isomerase (ec 5.3.3.8) (dodecenoyl-coa delta-isomerase) (d3,d2-enoyl-coa isomerase) (dbi-related protein 1) (drs-1) (hepatocellular carcinoma-associated antigen 88). [source:swissprot;acc:o75521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
194.557\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
194.392\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00085\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2689\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACLY\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atp-citrate synthase (ec 2.3.3.8) (atp-citrate (pro-s-)-lyase) (citrate cleavage enzyme). [source:swissprot;acc:p53396]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.792\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.619\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00081\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2690\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin 4 (wch4) (mercurial-insensitive water channel) (miwc). [source:swissprot;acc:p55087]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.191\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.046\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00077\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2691\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.193\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
188.048\vspace{3pt}}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2692\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin 5. [source:swissprot;acc:p55064]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.192\vspace{3pt}}&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2693\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MIP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.193\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.049\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2694\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
188.223\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.081\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00075\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2695\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SRP54\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
signal recognition particle 54 kda protein (srp54). [source:swissprot;acc:p13624]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.545\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.384\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2696\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACO1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
iron-responsive element binding protein 1 (ire-bp 1) (iron regulatory protein 1) (irp1) (ferritin repressor protein) (aconitate hydratase) (ec 4.2.1.3) (citrate hydro-lyase) (aconitase). [source:swissprot;acc:p21399]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.652\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.794\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0007\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2697\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARPC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
arp2/3 complex 34 kda subunit (p34-arc) (actin-related protein 2/3 complex subunit 2). [source:swissprot;acc:o15144]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.081\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.232\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00067\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2698\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SSR4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
188.435\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
188.31\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00066\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2699\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&&&\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Hugo is the HGNC identifier if it exists
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/