MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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Rank	description	Gene	Value Type	Network Comparison Type	Filtered	Interaction Map	green	red	network_comparison

Results: HTML CSV LaTeX

Showing element 551 to 600 of 3730 in total

Value Type  : Ranked
Network Comparison Type  : Divided
Interaction Map  : High confidence

Rank	description	Filtered	green	red	network_comparison
276	60s ribosomal protein l32. [swissprot;acc:p02433]	1	266.969	241.13	1.10716
	60s ribosomal protein l9. [swissprot;acc:p32969]	0	9922.33	10741.6	1.08257
277	40s ribosomal protein s29. [swissprot;acc:p30054]	1	267.642	241.849	1.10665
	60s ribosomal protein l17 (l23). [swissprot;acc:p18621]	0	10251.6	11096.8	1.08245
278	40s ribosomal protein s11. [swissprot;acc:p04643]	1	267.088	241.399	1.10642
	associated molecule with the sh3 domain of stam (amsh) like protein. [refseq;acc:nm_020799]	0	10763.4	11644	1.08181
279	anaphase promoting complex subunit 11 (hepatocellular carcinoma associated ring finger protein) (hspc214). [swissprot;acc:q9nyg5]		9812.39	10614.2	1.08171
	histone acetyltransferase type b subunit 2 (retinoblastoma binding protein p46) (retinoblastoma-binding protein 7) (rbbp-7). [swissprot;acc:q16576]	1	228.42	252.644	1.10605
280	crooked neck-like protein 1 (crooked neck homolog) (hcrn) (cgi-201) (mstp021). [swissprot;acc:q9bzj0]	0	11471.2	10620.1	1.08014
	metastasis-associated protein mta1. [swissprot;acc:q13330]	1	228.356	252.512	1.10578
281	60s ribosomal protein l17 (l23). [swissprot;acc:p18621]		267.335	241.808	1.10557
	phospholipid scramblase 3 (pl scramblase 3) (ca(2+)-dependent phospholipid scramblase 3). [swissprot;acc:q9nry6]	0	13514.5	12522.7	1.0792
282	chromatin assembly factor 1 subunit c (caf-1 subunit c) (chromatin assembly factor i p48 subunit) (caf-i 48 kda subunit) (caf-ip48) (retinoblastoma binding protein p48) (retinoblastoma-binding protein 4) (rbbp-4) (msi1 protein homolog). [swissprot;acc:q09028]	1	228.297	252.39	1.10553
	sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [swissprot;acc:q99961]	0	8732.68	8095.69	1.07868
283	60s ribosomal protein l11. [swissprot;acc:p39026]	1	267.346	241.828	1.10552
	lifeguard; kiaa0950 protein. [refseq;acc:nm_012306]	0	11959.2	11107.1	1.07672
284	crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [swissprot;acc:p56945]	1	203.235	224.657	1.10541
	tyrosinase-related gene segment, exon 5 (fragment). [sptrembl;acc:q15677]	0	16041.6	14898.9	1.0767
285	dj408b20.3 (novel protein similar to 60s acidic ribosomal protein p2 (rplp2)). [sptrembl;acc:q9h5a9]		9925.58	10686	1.07661
	t-complex protein 1, delta subunit (tcp-1-delta) (cct-delta) (stimulator of tar rna binding). [swissprot;acc:p50991]	1	203.242	224.647	1.10532
286	dyskerin (nucleolar protein nap57) (cbf5 homolog). [swissprot;acc:o60832]	0	11367.3	12228.2	1.07573
	enhancer of filamentation 1 (hef1) (crk-associated substrate-related protein) (cas-l) (casl) (pp105) (neural precursor cell expressed developmentally down-regulated 9). [swissprot;acc:q14511]	1	203.251	224.633	1.1052
287	40s ribosomal protein s4, y isoform 2. [swissprot;acc:q8td47]		266.079	240.758	1.10517
	proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [swissprot;acc:p12931]	0	16590.3	17842.7	1.07549
288	40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750]	1	266.078	240.758	1.10517
	5,6-dihydroxyindole-2-carboxylic acid oxidase precursor (ec 1.14.18.-) (dhica oxidase) (tyrosinase-related protein 1) (trp-1) (trp1) (trp) (catalase b) (glycoprotein-75) (melanoma antigen gp75). [swissprot;acc:p17643]	0	16053	14930.6	1.07517
289	forkhead box protein g1c (forkhead-related protein fkhl3) (hfk3) (fragment). [swissprot;acc:q14488]		14091.9	15147.2	1.07489
	hpaii tiny fragments locus 9c. [refseq;acc:nm_022727]	1	246.892	272.781	1.10486
290	interleukin-1 receptor-associated kinase 4; interleukin-1 receptor associated kinase 4. [refseq;acc:nm_016123]	0	14091.9	15147.2	1.07489
	ribonucleoside-diphosphate reductase m2 chain (ec 1.17.4.1) (ribonucleotide reductase small chain). [swissprot;acc:p31350]	1	210.064	231.969	1.10428
291	far upstream element-binding protein; far upstream element binding protein; fuse-binding protein. [refseq;acc:nm_003902]	0	11731.8	10922.9	1.07406
	nuclear transcription factor y subunit beta (nf-y protein chain b) (nf-yb) (ccaat-binding transcription factor subunit a) (cbf-a) (caat- box dna binding protein subunit b). [swissprot;acc:p25208]	1	228.037	251.679	1.10368
292	40s ribosomal protein s15a. [swissprot;acc:p39027]		266.414	241.411	1.10357
	ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [refseq;acc:nm_032260]	0	9574.98	10280.5	1.07368
293	60s ribosomal protein l23 (l17). [swissprot;acc:p23131]	1	265.717	240.782	1.10356
	ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [refseq;acc:nm_032260]	0	9583.27	10287.1	1.07344
294	brca2 and cdkn1a-interacting protein isoform bccipalpha; brca2 and cdkn1a-interacting protein; cdk inhibitor p21 binding protein; bccipalpha; bccipbeta; tok-1alpha; tok-1beta. [refseq;acc:nm_016567]	1	265.717	240.782	1.10356
	transcription initiation factor tfiid 20/15 kda subunits (tafii- 20/tafii-15) (tafii20/tafii15). [swissprot;acc:q16514]	0	13025.1	13981.5	1.07343
295	multisynthetase complex auxiliary component p43 [contains: endothelial-monocyte activating polypeptide ii (emap-ii) (small inducible cytokine subfamily e member 1)]. [swissprot;acc:q12904]	1	202.423	223.273	1.103
	transcription factor-like protein morf4 (mortality factor 4) (cellular senescence-related protein 1) (sen1). [swissprot;acc:q9y690]	0	12751.8	13687.7	1.07339
296	lon protease homolog, mitochondrial precursor (ec 3.4.21.-) (lon protease-like protein) (lonp) (lonhs). [swissprot;acc:p36776]		10941.8	10194.1	1.07335
	mitochondrial ribosomal protein l4 isoform a. [refseq;acc:nm_015956]	1	266.12	241.282	1.10294
297	60s ribosomal protein l7. [swissprot;acc:p18124]		259.984	235.727	1.1029
	daz associated protein 1 isoform b; deleted in azoospermia associated protein 1. [refseq;acc:nm_018959]	0	8719	8123.75	1.07327
298	40s ribosomal protein sa (p40) (34/67 kda laminin receptor) (colon carcinoma laminin-binding protein) (nem/1chd4) (multidrug resistance- associated protein mgr1-ag). [swissprot;acc:p08865]		12842.5	11977.8	1.07219
	calpain 2, large [catalytic] subunit precursor (ec 3.4.22.17) (calcium-activated neutral proteinase) (canp) (m-type) (m-calpain) (millimolar-calpain) (calpain large polypeptide l2). [swissprot;acc:p17655]	1	243.588	268.632	1.10281
299	3 beta-hydroxysteroid dehydrogenase (fragments). [sptrembl;acc:q9udk8]	0	11512.3	12338.7	1.07178
	calpain 1, large [catalytic] subunit (ec 3.4.22.17) (calcium-activated neutral proteinase) (canp) (mu-type) (mucanp) (micromolar-calpain). [swissprot;acc:p07384]	1	243.592	268.635	1.10281
300	camp-dependent protein kinase, gamma-catalytic subunit (ec 2.7.1.37) (pka c-gamma). [swissprot;acc:p22612]	0	8650.24	9270.49	1.0717
	metalloprotease 1; metalloprotease 1 (pitrilysin family). [refseq;acc:nm_014889]	1	166.351	150.959	1.10196

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.