MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 143 to 192 of 3228 in total

Value Type  : Measured
Network Comparison Type  : Divided
Interaction Map  : High confidence
Filtered  : 1

Rank	description	red	green	network_comparison
143	beta-1,4 mannosyltransferase. [refseq;acc:nm_019109]	9275.1	7089.65	1.30826
144	sad1/unc-84 protein-like 1. [swissprot;acc:o94901]	3349.9	4362.61	1.30231
145	ubiquitin activating enzyme e1-like protein. [refseq;acc:nm_006395]	16771.5	12889.1	1.30122
146	associated molecule with the sh3 domain of stam (amsh) like protein. [refseq;acc:nm_020799]	11068	8508.5	1.30082
147	putative breast adenocarcinoma marker (32kd). [refseq;acc:nm_014453]
148	associated molecule with the sh3 domain of stam. [refseq;acc:nm_006463]
149	neuroendocrine differentiation factor; comparative gene identification transcript 149. [refseq;acc:nm_016079]
150	protein hspc134 (protein cda04). [swissprot;acc:q9by43]
151	sh2 domain containing 3c; novel sh2-containing protein 3; sh2 domain-containing 3c; likely ortholog of mouse cas/hef1-associated signal transducer. [refseq;acc:nm_005489]	4578.09	5939.91	1.29746
152	melanoma antigen, family d, 4 isoform 1; mage1 protein; mage-e1 protein; maged4 protein. [refseq;acc:nm_030801]	23693.7	18263	1.29736
153	hepatocellular carcinoma-associated protein hca3. [refseq;acc:nm_138703]
154	melanoma-associated antigen 3 (mage-3 antigen) (antigen mz2-d). [swissprot;acc:p43357]
155	melanoma-associated antigen 11 (mage-11 antigen). [swissprot;acc:p43364]
156	melanoma-associated antigen 2 (mage-2 antigen). [swissprot;acc:p43356]
157	hepatocellular carcinoma-associated protein hca1. [refseq;acc:nm_020932]
158	melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [swissprot;acc:p43360]
159	necdin. [swissprot;acc:q99608]
160	melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [swissprot;acc:q9y5v3]
161	melanoma-associated antigen f1 (mage-f1 antigen). [swissprot;acc:q9hay2]
162	melanoma antigen, family b, 6. [refseq;acc:nm_173523]
163	melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [swissprot;acc:p43358]
164	melanoma-associated antigen 9 (mage-9 antigen). [swissprot;acc:p43362]
165	melanoma-associated antigen 8 (mage-8 antigen). [swissprot;acc:p43361]
166	melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [swissprot;acc:o60732]
167	melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [swissprot;acc:p43365]
168	melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [swissprot;acc:p43355]
169	melanoma-associated antigen 10 (mage-10 antigen). [swissprot;acc:p43363]
170	melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [swissprot;acc:p43366]
171	melanoma-associated antigen d2 (mage-d2 antigen) (breast cancer associated gene 1 protein) (bcg-1) (11b6) (hepatocellular carcinoma associated protein jcl-1). [swissprot;acc:q9unf1]
172	trophinin. [swissprot;acc:q12816]
173	breast cancer antiestrogen resistance 3. [refseq;acc:nm_003567]	4579.34	5940.64	1.29727
174	mad protein (max dimerizer). [swissprot;acc:q05195]	4455.95	5774.03	1.2958
175	max interacting protein 1 (mxi1 protein). [swissprot;acc:p50539]	4456.67	5773.77	1.29553
176	max-interacting transcriptional repressor mad4 (max-associated protein 4) (max dimerization protein 4). [swissprot;acc:q14582]	4456.93	5773.67	1.29544
177	max dimerization protein 3; likely ortholog of mouse max dimerization protein 3. [refseq;acc:nm_031300]	4457.06	5773.63	1.29539
178	myosin vb (myosin 5b) (fragment). [swissprot;acc:q9ulv0]	21591.5	27904.5	1.29238
179	myosin vc (myosin 5c). [swissprot;acc:q9nqx4]
180	myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [swissprot;acc:q9y4i1]
181	eukaryotic translation initiation factor 4 gamma, 3. [refseq;acc:nm_003760]	4068.56	5252.6	1.29102
182	rna-binding protein. [refseq;acc:nm_019027]	4069.83	5252.17	1.29051
183	apobec-1 complementation factor isoform 1; apobec-1 stimulating protein; apo-b rna editing protein. [refseq;acc:nm_014576]
184	ns1-associated protein 1. [refseq;acc:nm_006372]
185	heterogeneous nuclear ribonucleoprotein r (hnrnp r). [swissprot;acc:o43390]
186	eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [swissprot;acc:q04637]	4071.1	5251.75	1.29001
187	small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [swissprot;acc:p43331]	4569.48	5885.79	1.28807
188	source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [refseq;acc:nm_178862]	4571.89	5864.86	1.28281
189	oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [swissprot;acc:p46977]
190	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [swissprot;acc:p39656]
191	splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap 155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit). [swissprot;acc:o75533]	4638.1	5923.4	1.27712
192	a-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (a-raf-1) (proto-oncogene pks). [swissprot;acc:p10398]	17757.5	14008	1.26767

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.