Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 2325 to 2374 of 12912 in total 
    Network Comparison Type: Divided
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
582\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor gamma-2 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p18507]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein barh-like 1. [source:swissprot;acc:q9hbu1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08316\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to putative transmembrane protein; homolog of yeast golgi membrane protein yif1p (yip1p-interacting factor). [source:refseq;acc:nm\_033557]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
583\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aflatoxin b1 aldehyde reductase 2 (ec 1.-.-.-) (afb1-ar 2). [source:swissprot;acc:o95154]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
interleukin-1 receptor-associated kinase 4; interleukin-1 receptor associated kinase 4. [source:refseq;acc:nm\_016123]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
opsin 4 (melanopsin). [source:swissprot;acc:q9uhm6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinal short-chain dehydrogenase/reductase 3. [source:refseq;acc:nm\_016246]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08316\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
584\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha/beta hydrolase domain containing protein 3; lung alpha/beta hydrolase 3. [source:refseq;acc:nm\_138340]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-4 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p48169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 1 (larp) (serologically defined breast cancer antigen ny-br- 24). [source:swissprot;acc:q8wyj6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
104.459\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
113.143\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08313\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-cell leukemia homeobox protein 2 (homeobox protein hox-11l1) (neural crest homeobox protein). [source:swissprot;acc:o43763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
585\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor epsilon subunit precursor (gaba(a) receptor). [source:swissprot;acc:p78334]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
golgi membrane protein sb140; smooth muscle cell associated protein 5. [source:refseq;acc:nm\_030799]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h3.3 (h3.a) (h3.b) (h3.3q). [source:swissprot;acc:p06351]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.5667\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.8498\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08306\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-cell leukemia homeobox protein 1 (homeobox protein hox-11) (tcl-3 proto-oncogene). [source:swissprot;acc:p31314]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
586\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha/beta hydrolase domain containing protein 1 isoform 2; lung alpha/beta hydrolase protein 1. [source:refseq;acc:nm\_152870]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj1099d15.1 (putative dnaj protein). [source:sptrembl;acc:q9h4j9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.5667\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.8498\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08306\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hect domain containing protein 1 (fragment). [source:swissprot;acc:q9ult8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylserine receptor; phosphatidylserine receptor beta. [source:refseq;acc:nm\_015167]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
587\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ftsj homolog 3; likely ortholog of mouse ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 3. [source:refseq;acc:nm\_017647]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.7204\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.0156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08305\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-1 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p14867]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein barh-like 2. [source:swissprot;acc:q9umq3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06411\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (ec 1.2.1.27) (mmsdh). [source:swissprot;acc:q02252]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
588\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
10 kda heat shock protein, mitochondrial (hsp10) (10 kda chaperonin) (cpn10). [source:swissprot;acc:q04984]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-3 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p34903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
imp2 inner mitochondrial membrane protease-like; inner mitochondrial membrane peptidase 2 like. [source:refseq;acc:nm\_032549]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.7294\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.6872\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.083\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
shwachman-bodian-diamond syndrome protein (cgi-97). [source:swissprot;acc:q9y3a5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.557\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.362\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06375\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
589\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
microsomal signal peptidase 18 kda subunit (ec 3.4.-.-) (spase 18 kda subunit) (spc18) (endopeptidase sp18). [source:swissprot;acc:p21378]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.7294\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.6872\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.083\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase b14 subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-b14) (ci-b14). [source:swissprot;acc:p56556]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13424\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rab acceptor 1 (prenylated); prenylated rab acceptor 1. [source:refseq;acc:nm\_006423]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm2 (small nuclear ribonuclear protein d homolog) (g7b) (snrnp core sm-like protein sm-x5). [source:swissprot;acc:q9y333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.546\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06371\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
590\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
oligoribonuclease, mitochondrial precursor (ec 3.1.-.-) (small fragment nuclease) (cgi-114). [source:swissprot;acc:q9y3b8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribonucleoside-diphosphate reductase m1 chain (ec 1.17.4.1) (ribonucleotide reductase large chain). [source:swissprot;acc:p23921]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.279\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06333\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to expressed sequence aa415817. [source:sptrembl;acc:q8n4q9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13424\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21a (k-ras 2a) (ki-ras) (c-k-ras). [source:swissprot;acc:p01116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
108.671\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
100.365\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08276\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
591\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
choline o-acetyltransferase (ec 2.3.1.6) (choactase) (choline acetylase) (chat). [source:swissprot;acc:p28329]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23526.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27879.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-d9 (hox-4c) (hox-5.2). [source:swissprot;acc:p28356]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6740.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13415\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat protein shoc-2 (ras-binding protein sur-8). [source:swissprot;acc:q9uq13]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
108.659\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
100.356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08274\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribonuclease p protein subunit p30 (ec 3.1.26.5) (rnasep protein p30) (rnase p subunit 2). [source:swissprot;acc:p78346]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.439\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0633\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
592\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.c (h2b/c). [source:swissprot;acc:q99880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3946.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4475.47\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 7; sds22. [source:refseq;acc:nm\_002712]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
91.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
97.4011\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06298\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 2 (ralgds-like factor) (ras-associated protein rab2l). [source:swissprot;acc:o15211]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
108.659\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
100.356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08274\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-gated potassium channel beta-2 subunit (k+ channel beta-2 subunit) (kv-beta-2) (hkvbeta2). [source:swissprot;acc:q13303]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
23526.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
27879.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.18502\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
593\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aflatoxin b1 aldehyde reductase 1 (ec 1.-.-.-) (afb1-ar 1) (aldoketoreductase 7). [source:swissprot;acc:o43488]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.q (h2b/q) (h2b-gl105). [source:swissprot;acc:q16778]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3946.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4475.47\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tata-binding protein-associated phosphoprotein (down-regulator of transcription 1) (dr1 protein). [source:swissprot;acc:q01658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.118\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.406\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06278\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21/h-ras-1 (c-h-ras). [source:swissprot;acc:p01112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
108.653\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
100.352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08272\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
594\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h3.1 (h3/a) (h3/c) (h3/d) (h3/f) (h3/h) (h3/i) (h3/j) (h3/k) (h3/l). [source:swissprot;acc:p16106]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3946.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4475.47\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin alpha-1 subunit (karyopherin alpha-1 subunit) (srp1-beta) (rag cohort protein 2) (nucleoprotein interactor 1) (npi-1). [source:swissprot;acc:p52294]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23517.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27867.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18498\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/