MK5 Microarray Data

Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 1525 to 1574 of 12912 in total

Network Comparison Type	Divided
Interaction Map	High confidence
Filtered	1

Rank	description	Value Type	red	green	network_comparison	
382	40s ribosomal protein s23. [source:swissprot;acc:p39028]	Rooted	49.8325	45.2077	1.1023	
382	parkinson disease (autosomal recessive, juvenile) 2, parkin isoform 1; parkin. [source:refseq;acc:nm_004562]	Measured	4533.74	5279.4	1.16447	
382	rna-binding protein. [source:refseq;acc:nm_019027]	Squared	15043.7	18560.1	1.23375	
382	tata box binding protein-associated factor, rna polymerase ii, q; taf7-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 50 kd; tbp-associated factor, rna polymerase ii, q. [source:refseq;acc:nm_024885]	Ranked	200.791	183.66	1.09328	
383	28s ribosomal protein s12, mitochondrial precursor (mpr-s12) (mt- rps12). [source:swissprot;acc:o15235]	Rooted	49.8325	45.2077	1.1023	
383	apobec-1 complementation factor isoform 1; apobec-1 stimulating protein; apo-b rna editing protein. [source:refseq;acc:nm_014576]	Squared	15043.7	18560.1	1.23375	
383	hepatoma-derived growth factor-related protein 2. [source:refseq;acc:nm_032631]	Measured	4533.74	5279.4	1.16447	
383	rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]	Ranked	237.862	217.739	1.09242	
384	60s ribosomal protein l23 (l17). [source:swissprot;acc:p23131]	Rooted	50.7723	46.0607	1.10229	
384	cgi-142; hepatoma-derived growth factor 2. [source:refseq;acc:nm_016073]	Measured	4533.74	5279.4	1.16447	
384	ns1-associated protein 1. [source:refseq;acc:nm_006372]	Squared	15043.7	18560.1	1.23375	
384	transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]	Ranked	266.421	244.236	1.09083	
385	brca2 and cdkn1a-interacting protein isoform bccipalpha; brca2 and cdkn1a-interacting protein; cdk inhibitor p21 binding protein; bccipalpha; bccipbeta; tok-1alpha; tok-1beta. [source:refseq;acc:nm_016567]	Rooted	50.7723	46.0607	1.10229	
385	heterogeneous nuclear ribonucleoprotein r (hnrnp r). [source:swissprot;acc:o43390]	Squared	15043.7	18560.1	1.23375	
385	pc4 and sfrs1 interacting protein 2; pc4 and sfrs1 interacting protein 1; transcriptional coactivator p52/p75. [source:refseq;acc:nm_033222]	Measured	4533.74	5279.4	1.16447	
385	transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]	Ranked	266.421	244.236	1.09083	
386	40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]	Ranked	242.238	264.11	1.09029	
386	60s ribosomal protein l8. [source:swissprot;acc:p25120]	Measured	4533.74	5279.4	1.16447	
386	protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]	Rooted	50.0513	45.4124	1.10215	
386	scratch; scratch 1. [source:refseq;acc:nm_031309]	Squared	40388.9	49827.5	1.23369	
387	40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]	Ranked	242.238	264.11	1.09029	
387	60s ribosomal protein l14 (cag-isl 7). [source:swissprot;acc:p50914]	Rooted	50.3345	45.6718	1.10209	
387	eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [source:swissprot;acc:q04637]	Squared	15053	18568	1.23351	
387	hepatoma-derived growth factor (hdgf) (high-mobility group protein 1- like 2) (hmg-1l2). [source:swissprot;acc:p51858]	Measured	4533.74	5279.4	1.16447	
388	dj850e9.1 (novel c2h2 type zinc finger protein similar to drosophila scratch (scrt), slug and xenopus snail) (fragment). [source:sptrembl;acc:q9nq03]	Squared	40315.7	49716.4	1.23318	
388	pwwp domain containing 1; hdgf (hepatoma-derived growth factor) like. [source:refseq;acc:nm_138574]	Measured	4533.74	5279.4	1.16447	
388	serine racemase (ec 5.1.1.-). [source:swissprot;acc:q9gzt4]	Rooted	50.3345	45.6718	1.10209	
388	small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]	Ranked	227.575	208.756	1.09015	
389	60s ribosomal protein l34. [source:swissprot;acc:p49207]	Rooted	50.3345	45.6718	1.10209	
389	arginyl-trna synthetase-like; arginine-trna ligase. [source:refseq;acc:nm_020320]	Squared	31819.7	39222.2	1.23264	
389	probable atp-dependent rna helicase p54 (oncogene rck) (dead-box protein 6). [source:swissprot;acc:p26196]	Measured	4533.74	5279.4	1.16447	
389	small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]	Ranked	227.575	208.756	1.09015	
390	60s ribosomal protein l13, mitochondrial (l13mt). [source:swissprot;acc:q9byd1]	Ranked	241.828	263.62	1.09011	
390	nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]	Squared	28895.6	35572.8	1.23108	
390	protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]	Rooted	50.3345	45.6718	1.10209	
390	rw1 protein (fragment). [source:swissprot;acc:q92545]	Measured	4533.74	5279.4	1.16447	
391	40s ribosomal protein s16. [source:swissprot;acc:p17008]	Ranked	241.828	263.62	1.09011	
391	importin beta-1 subunit (karyopherin beta-1 subunit) (nuclear factor p97) (importin 90). [source:swissprot;acc:q14974]	Squared	28895.6	35572.8	1.23108	
391	protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]	Rooted	50.3345	45.6718	1.10209	
391	tar dna-binding protein-43 (tdp-43). [source:swissprot;acc:q13148]	Measured	3658.76	3144.39	1.16358	
392	60s ribosomal protein l13a (23 kda highly basic protein). [source:swissprot;acc:p40429]	Ranked	241.83	263.615	1.09008	
392	60s ribosomal protein l3-like. [source:swissprot;acc:q92901]	Rooted	50.3313	45.6913	1.10155	
392	atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm_024072]	Measured	3641.89	4236.95	1.16339	
392	transducin beta-like 1x protein (transducin-beta-like 1, x-linked). [source:swissprot;acc:o60907]	Squared	28895.6	35572.8	1.23108	
393	dna-directed rna polymerase ii largest subunit (ec 2.7.7.6) (rpb1). [source:swissprot;acc:p24928]	Rooted	49.8842	45.2875	1.1015	
393	eukaryotic translation initiation factor 4e (eif-4e) (eif4e) (mrna cap-binding protein) (eif-4f 25 kda subunit). [source:swissprot;acc:p06730]	Measured	4490.28	5222.25	1.16301	
393	spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]	Ranked	225.719	207.072	1.09005	
393	transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]	Squared	28895.6	35572.8	1.23108	
394	bai1-associated protein 3; bai-associated protein 3. [source:refseq;acc:nm_003933]	Measured	4490.28	5222.25	1.16301	
394	dipeptidylpeptidase 9; dipeptidyl peptidase 9; dipeptidyl peptidase iv-related protein-2. [source:refseq;acc:nm_139159]	Ranked	218.827	238.407	1.08948	

Legend:
- Rank is the rank after comparing the two networks
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.