MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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description	Network Comparison Type	red	Gene	Rank	Hugo	network_comparison	Value Type	Interaction Map	Filtered	green

Results: HTML CSV LaTeX

Showing element 601 to 650 of 2060 in total

Network Comparison Type  : Subtracted
red  : 0
network_comparison  : 0
Interaction Map  : High confidence
Filtered  : 1
green  : 0

description	Rank	Hugo	Value Type
glutamyl aminopeptidase (ec 3.4.11.7) (eap) (aminopeptidase a) (apa) (differentiation antigen gp160). [swissprot;acc:q07075]	2957	ENPEP	Measured
			Ranked
			Squared
			Rooted
glycerol-3-phosphate acyltransferase, mitochondrial precursor (ec 2.3.1.15) (gpat). [swissprot;acc:q9hcl2]	3033	GPAM	Measured
			Ranked
			Squared
			Rooted
glycine receptor alpha-1 chain precursor (glycine receptor 48 kda subunit) (strychnine binding subunit). [swissprot;acc:p23415]	2919	GLRA1	Measured
			Ranked
			Squared
			Rooted
glycine receptor alpha-2 chain precursor. [swissprot;acc:p23416]	3121	GLRA2	Measured
			Ranked
			Squared
			Rooted
glycine receptor alpha-3 chain precursor. [swissprot;acc:o75311]	2920	GLRA3	Measured
			Ranked
			Squared
			Rooted
glycine receptor beta chain precursor (glycine receptor 58 kda subunit). [swissprot;acc:p48167]	3083	GLRB	Measured
			Ranked
			Squared
			Rooted
gpi transamidase component pig-s (phosphatidylinositol-glycan biosynthesis, class s protein). [swissprot;acc:q96s52]	3165	PIGS	Measured
			Ranked
			Squared
			Rooted
guanine nucleotide exchange factor mss4 (rab interacting factor). [swissprot;acc:p47224]	2777	RABIF	Measured
			Ranked
			Squared
			Rooted
guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [swissprot;acc:q9byb4]	2761	GNB1L	Measured
			Ranked
			Squared
			Rooted
h2a histone family, member j isoform 1. [refseq;acc:nm_018267]	3077	H2AFJ	Measured
			Ranked
			Squared
			Rooted
hcdi protein. [refseq;acc:nm_020195]	3138	C14orf124	Measured
			Ranked
			Squared
			Rooted
headcase homolog; hhdc for homolog of drosophila headcase. [refseq;acc:nm_016217]	3068	HECA	Measured
			Ranked
			Squared
			Rooted
heat-shock 20 kda like-protein p20. [swissprot;acc:o14558]	3225	HSPB6	Measured
			Ranked

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.