MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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description	Rank	Gene	Network Comparison Type	Value Type	Hugo	Interaction Map	red	Filtered	green	network_comparison

Results: HTML CSV LaTeX

Showing element 2651 to 2700 of 66312 in total

Filtered  : 1

description	Rank	Network Comparison Type	Value Type	Hugo	Interaction Map	red	green	network_comparison
60s ribosomal protein l39. [swissprot;acc:p02404]	2729	Subtracted	Measured	no value	Low confidence	7933.19	8166.62	233.43
	2744	Divided	Squared			45196.9	43583	1.03703
	2780		Rooted			71.5491	73.8932	1.03276
	2859	Subtracted						2.3441
	3195		Ranked			202.665	199.481	3.184
	3220	Divided						1.01596
60s ribosomal protein l4 (l1). [swissprot;acc:p36578]	277	Subtracted		RPL4	High confidence	239.277	262.434	23.157
	359	Divided						1.09678
	513		Rooted			51.5881	47.3127	1.09036
	754	Subtracted						4.2754
	2036	Divided	Squared		Low confidence	41673.2	40067.7	1.04007
	2167				High confidence	14024.2	15210.1	1.08456
	2360		Measured			3843.06	3682.72	1.04354
	2459	Subtracted						160.34
	2469		Squared			14024.2	15210.1	1185.9
	2662				Low confidence	41673.2	40067.7	1605.5
	4497		Ranked			206.721	208.457	1.736
	4517	Divided						1.0084
	4621		Measured			7464.51	7586.23	1.01631
	4670	Subtracted						121.72
	4805	Divided	Rooted			69.2791	70.3218	1.01505
	4813	Subtracted						1.0427
60s ribosomal protein l5. [swissprot;acc:p46777]	244		Ranked	RPL5	High confidence	241.899	265.924	24.025
	326	Divided						1.09932
	422		Rooted			50.4641	45.9293	1.09873
	687	Subtracted						4.5348
	1984	Divided	Squared			12586.8	13748.2	1.09227
	1985				Low confidence	41539	39926.3	1.04039
	2169		Measured		High confidence	3639.65	3459.64	1.05203
	2415	Subtracted						180.01
	2489		Squared			12586.8	13748.2	1161.4
	2625				Low confidence	41539	39926.3	1612.7
	4110		Ranked			207.337	209.485	2.148
	4179	Divided						1.01036
	4623		Measured			7431.51	7552.25	1.01625
	4673	Subtracted						120.74
	4848	Divided	Rooted			69.0542	70.0063	1.01379
	4858	Subtracted						0.9521
60s ribosomal protein l6 (tax-responsive enhancer element binding protein 107) (taxreb107) (neoplasm-related protein c140). [swissprot;acc:q02878]	165		Ranked	RPL6		209.954	221.607	11.653
	179	Divided						1.0555
	2651		Squared			37407.8	36053.6	1.03756
	3670	Subtracted						1354.2
	4604	Divided	Rooted			66.9425	65.5857	1.02069
	4697	Subtracted						1.3568
	4995	Divided	Measured			6922.79	6911.72	1.0016
	4996	Subtracted						11.07
60s ribosomal protein l7. [swissprot;acc:p18124]	233		Ranked	no value	High confidence	235.727	259.984	24.257
	297	Divided						1.1029
	500		Rooted			52.6483	48.2135	1.09198
	718	Subtracted						4.4348

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.