MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

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description	Gene	Rank	Network Comparison Type	Hugo	Value Type	Interaction Map	red	Filtered	green	network_comparison

Results: HTML CSV LaTeX

Showing element 1341 to 1390 of 8289 in total

Network Comparison Type  : Divided
Value Type  : Ranked
Filtered  : 1

description	Rank	Hugo	Interaction Map	red	green	network_comparison
cdc42-binding protein kinase beta; cdc42-binding protein kinase beta (dmpk-like); mrck beta; dmpk-like. [refseq;acc:nm_006035]	2889	no value	Low confidence	202.423	199.021	1.01709
cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [swissprot;acc:q15642]	437	TRIP10	High confidence	209.921	226.459	1.07878
	978		Low confidence	201.137	196.296	1.02466
cdc45-related protein (porc-pi-1). [swissprot;acc:o75419]	3197	CDC45L		200.602	197.434	1.01605
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [refseq;acc:nm_001253]	692	CDC5L	High confidence	217.602	206.195	1.05532
	885		Low confidence	202.572	197.533	1.02551
cdc6 homolog; cdc18 (cell division cycle 18, s.pombe, homolog)-like; cdc6-related protein. [refseq;acc:nm_001254]	4841	CDC6		198.263	197.58	1.00346
cdk-activating kinase assembly factor mat1 (ring finger protein mat1) (menage a trois) (cdk7/cyclin h assembly factor) (p36) (p35) (cyclin g1 interacting protein). [swissprot;acc:p51948]	1492	MNAT1		201.276	197.051	1.02144
	3209		High confidence	0.00001	0.00001	1
cdp-diacylglycerol--inositol 3-phosphatidyltransferase (ec 2.7.8.11) (phosphatidylinositol synthase) (ptdins synthase) (pi synthase). [swissprot;acc:o14735]	1536	CDIPT	Low confidence	198.934	194.79	1.02127
	2155		High confidence	200.063	198.71	1.00681
cell adhesion molecule with homology to l1cam precursor; neural cell adhesion molecule; cell adhesion molecule l1-like; l1 cell adhesion molecule 2. [refseq;acc:nm_006614]	2739	CHL1		198.278	198.321	1.00022
	2759		Low confidence	200.289	196.856	1.01744
cell division control protein 2 homolog (ec 2.7.1.-) (p34 protein kinase) (cyclin-dependent kinase 1) (cdk1). [swissprot;acc:p06493]	1585	CDC2	High confidence	168.145	170.888	1.01631
	2035		Low confidence	201.546	197.713	1.01939
cell division cycle 2-like protein kinase 5 (ec 2.7.1.-) (cholinesterase-related cell division controller) (cdc2-related protein kinase 5). [swissprot;acc:q14004]	3984	CDC2L5		202.774	200.388	1.01191
cell division cycle 2-related protein kinase 7 (ec 2.7.1.-) (cdc2- related protein kinase 7) (crkrs). [swissprot;acc:q9nyv4]	4003	CRKRS		202.807	200.463	1.01169
cell division cycle 20; cell division cycle 20, s.cerevisiae homolog. [refseq;acc:nm_001255]	3875	CDC20		197.394	194.891	1.01284
cell division cycle protein 23; anaphase-promoting complex subunit 8. [refseq;acc:nm_004661]	1481	CDC23	High confidence	208.432	204.516	1.01915
	3443		Low confidence	201.288	198.276	1.01519
cell division protein kinase 2 (ec 2.7.1.-) (p33 protein kinase). [swissprot;acc:p24941]	1583	CDK2	High confidence	168.091	170.837	1.01634
	2434		Low confidence	200.752	197.128	1.01838
cell division protein kinase 3 (ec 2.7.1.-). [swissprot;acc:q00526]	1581	CDK3	High confidence	168.002	170.753	1.01637
	2468		Low confidence	200.898	197.292	1.01828
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [swissprot;acc:p11802]	3	CDK4		223	330	1.47982
cell division protein kinase 5 (ec 2.7.1.-) (tau protein kinase ii catalytic subunit) (tpkii catalytic subunit) (serine/threonine protein kinase pssalre). [swissprot;acc:q00535]	2850	CDK5	High confidence	0.00001	0.00001	1
	3110		Low confidence	205.018	201.697	1.01647
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [swissprot;acc:q00534]	4	CDK6		223	330	1.47982
cell division protein kinase 7 (ec 2.7.1.-) (cdk-activating kinase) (cak) (tfiih basal transcription factor complex kinase subunit) (39 kda protein kinase) (p39 mo15) (stk1) (cak1). [swissprot;acc:p50613]	2522	CDK7		202.206	198.603	1.01814
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [swissprot;acc:p49336]	2990	CDK8	High confidence	0.00001	0.00001	1
	4252		Low confidence	202.895	204.841	1.00959
cell division protein kinase 9 (ec 2.7.1.-) (serine/threonine-protein kinase pitalre) (c-2k). [swissprot;acc:p50750]	2618	CDK9		202.507	206.118	1.01783
	2974		High confidence	0.00001	0.00001	1
cell matrix adhesion regulator (cell adhesion regulatory protein) (cell adhesion regulator). [swissprot;acc:q04762]	3607	no value	Low confidence	207.913	210.891	1.01432
cellular modulator of immune recognition. [refseq;acc:nm_145021]	1179	MARCH8	High confidence	218.186	212.672	1.02593
	4714		Low confidence	208.303	207.134	1.00564
cellular nucleic acid binding protein (cnbp). [swissprot;acc:p20694]	3855	CNBP		205.058	202.43	1.01298
cellular repressor of e1a-stimulated genes 2. [refseq;acc:nm_153836]	113	CREG2		197.763	212.011	1.07205
	699		High confidence	220.438	209.118	1.05413
cellular repressor of e1a-stimulated genes. [refseq;acc:nm_003851]	112	CREG1	Low confidence	197.762	212.013	1.07206
	705		High confidence	220.438	209.118	1.05413
cellular tumor antigen p53 (tumor suppressor p53) (phosphoprotein p53) (antigen ny-co-13). [swissprot;acc:p04637]	611	TP53	Low confidence	191.875	186.357	1.02961
centaurin beta 1 (cnt-b1). [swissprot;acc:q15027]	2037	CENTB1	High confidence	218.919	220.812	1.00865
	2827		Low confidence	201.659	198.246	1.01722
centaurin beta 2 (cnt-b2). [swissprot;acc:q15057]	2035	CENTB2	High confidence	218.919	220.812	1.00865
	2802		Low confidence	201.726	198.295	1.0173
centaurin beta 5 (cnt-b5). [swissprot;acc:q96p50]	2034	CENTB5	High confidence	218.919	220.812	1.00865
	2826		Low confidence	201.664	198.249	1.01723
centaurin gamma 1. [swissprot;acc:q99490]	1924	CENTG1	High confidence	220.659	218.452	1.0101
	3268		Low confidence	202.944	199.8	1.01574

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.