Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Gene Rank description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 1713 to 1762 of 6456 in total 
    Value Type: Ranked
    Interaction Map: High confidence
    Filtered: 1
    
\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
857\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
midasin (midas-containing protein). [source:swissprot;acc:q9nu22]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.218\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
228.698\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.52\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putatative 28 kda protein. [source:refseq;acc:nm\_020143]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.241\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.467\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0406\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
858\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 68 kda protein (srp68). [source:swissprot;acc:q9uhb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.306\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.806\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.5\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 12. [source:refseq;acc:nm\_177424]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.446\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.997\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04043\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
859\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l39. [source:swissprot;acc:p02404]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.7983\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42.3003\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.498\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
860\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l18a. [source:swissprot;acc:q02543]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar rna-associated protein alpha isoform. [source:refseq;acc:nm\_022917]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.024\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.544\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.48\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
861\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s19. [source:swissprot;acc:p39019]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 12. [source:refseq;acc:nm\_177424]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.446\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.997\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.449\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
862\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l31. [source:swissprot;acc:p12947]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pyruvate kinase, m1 isozyme (ec 2.7.1.40) (pyruvate kinase muscle isozyme) (cytosolic thyroid hormone-binding protein) (cthbp) (thbp1). [source:swissprot;acc:p14618]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.357\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
239.778\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.421\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
863\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.194\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.957\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03999\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
xenotropic and polytropic retrovirus receptor. [source:refseq;acc:nm\_004736]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.028\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.623\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.405\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
864\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha' chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19784]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.194\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.957\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03999\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec8. [source:swissprot;acc:q96a65]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.449\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.313\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
865\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 (rna polymerase b transcription factor 3). [source:swissprot;acc:p20290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.961\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.814\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03997\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 174 (aw-1). [source:swissprot;acc:q15697]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.963\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.239\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.276\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
866\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 68 kda protein (srp68). [source:swissprot;acc:q9uhb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.306\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.806\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03994\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger imprinted 2. [source:swissprot;acc:q9nzv7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.232\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.272\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
867\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s3a. [source:swissprot;acc:p49241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.689\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.674\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03981\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 18 (zinc finger protein kox11) (fragment). [source:swissprot;acc:p17022]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.956\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.223\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.267\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
868\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
diphosphomevalonate decarboxylase (ec 4.1.1.33) (mevalonate pyrophosphate decarboxylase) (mevalonate (diphospho)decarboxylase). [source:swissprot;acc:p53602]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.298\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.571\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03975\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 215 (bwscr2 associated zinc-finger protein 2) (baz 2). [source:swissprot;acc:q9ul58]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.956\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.223\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.267\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
869\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec8. [source:swissprot;acc:q96a65]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.449\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03969\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 24 (zinc finger protein 191) (zinc finger protein kox17) (retinoic acid suppression protein a) (rsg-a). [source:swissprot;acc:p17028]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.955\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.221\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.266\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
870\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 homolog 3. [source:swissprot;acc:q13892]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.832\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03962\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 305. [source:swissprot;acc:o43309]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.954\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.219\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.265\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
871\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 100 kda subunit (cpsf 100 kda subunit) (fragment). [source:swissprot;acc:q9p2i0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
110.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
114.552\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 232. [source:swissprot;acc:q9uny5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.954\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.264\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
872\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein k (hnrnp k) (dc-stretch binding protein) (csbp) (transformation upregulated nuclear protein) (tunp). [source:swissprot;acc:q07244]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.413\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.272\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03948\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 99. [source:refseq;acc:nm\_032164]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.954\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.264\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
873\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
u4/u6 small nuclear ribonucleoprotein prp4 (u4/u6 snrnp 60 kda protein) (wd splicing factor prp4) (hprp4). [source:swissprot;acc:o43172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.413\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.272\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03948\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 213 (putative transcription factor cr53). [source:swissprot;acc:o14771]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.954\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.217\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.263\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
874\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-1 subunit (ampk gamma-1 chain) (ampkg). [source:swissprot;acc:p54619]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 274 (zinc finger protein sp2114) (zinc finger protein hfb101) (zinc finger protein zfp2) (zf2). [source:swissprot;acc:q96gc6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.953\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.262\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
875\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-2 chain (ec 2.7.1.-) (ampk alpha-2 chain). [source:swissprot;acc:p54646]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
junction plakoglobin (desmoplakin iii). [source:swissprot;acc:p14923]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.906\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.653\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.253\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
876\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-1 chain (ec 2.7.1.-) (ampk alpha-1 chain). [source:swissprot;acc:q13131]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tax interaction protein 1. [source:refseq;acc:nm\_014604]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.906\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.653\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.253\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
877\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-2 subunit (ampk beta-2 chain). [source:swissprot;acc:o43741]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 444; endothelial zinc finger protein 2. [source:refseq;acc:nm\_018337]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
269.896\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
278.093\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.197\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
878\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 7. [source:swissprot;acc:o15400]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.181\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.012\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.169\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
879\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-1 subunit (ampk beta-1 chain) (ampkb). [source:swissprot;acc:q9y478]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanyl-trna synthetase alpha chain (ec 6.1.1.20) (phenylalanine- -trna ligase alpha chain) (phers) (cml33). [source:swissprot;acc:q9y285]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.491\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.323\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.168\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
880\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-2 subunit (ampk gamma-2 chain) (ampk gamma2) (h91620p). [source:swissprot;acc:q9ugj0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanine-trna synthetase. [source:refseq;acc:nm\_006567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.491\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.323\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.168\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
881\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
l-myc-1 proto-oncogene protein. [source:swissprot;acc:p12524]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.604\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.001\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03928\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 (rna polymerase b transcription factor 3). [source:swissprot;acc:p20290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.961\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.814\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.147\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/