Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

  • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 2008 to 2057 of 25824 in total
    Interaction Map: High confidence
    Filtered: 1
    \def\wcA{0.125\textwidth} \def\wcB{0.125\textwidth} \def\wcC{0.125\textwidth} \def\wcD{0.125\textwidth} \def\wcE{0.125\textwidth} \def\wcF{0.125\textwidth} \def\wcG{0.125\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 251\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tyrosine-protein kinase hck (ec 2.7.1.112) (p59-hck/p60-hck) (hemopoietic cell kinase). [source:swissprot;acc:p08631]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 252\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 51286.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 42334.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8952.1\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent crk-like protein. [source:swissprot;acc:p46109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [source:swissprot;acc:q04637]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 237.292\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 212.457\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11689\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent glycogen [starch] synthase, muscle (ec 2.4.1.11). [source:swissprot;acc:p13807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 9648.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10994.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1346.63\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent mad protein (max dimerizer). [source:swissprot;acc:q05195]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 228\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.333\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 23.667\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear transcription factor y subunit beta (nf-y protein chain b) (nf-yb) (ccaat-binding transcription factor subunit a) (cbf-a) (caat- box dna binding protein subunit b). [source:swissprot;acc:p25208]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 51.6736\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 58.4422\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.13099\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent pas domain containing serine/threonine kinase; pas-serine/threonine kinase. [source:refseq;acc:nm\_015148]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 69165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52991.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.3052\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 116.061\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 125.434\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 9.373\vspace{3pt}}\\\hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 253\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent b-cell lymphoma 6 protein (bcl-6) (zinc finger protein 51) (laz-3 protein) (bcl-5). [source:swissprot;acc:p41182]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 69165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52991.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.3052\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 9642.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10986.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1344.18\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent glycogen [starch] synthase, muscle (ec 2.4.1.11). [source:swissprot;acc:p13807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 39478.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48419\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8940.2\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent mad protein (max dimerizer). [source:swissprot;acc:q05195]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 228\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.333\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11583\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear transcription factor y subunit beta (nf-y protein chain b) (nf-yb) (ccaat-binding transcription factor subunit a) (cbf-a) (caat- box dna binding protein subunit b). [source:swissprot;acc:p25208]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 251.679\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 228.037\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 23.642\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase abl1 (ec 2.7.1.112) (p150) (c-abl). [source:swissprot;acc:p00519]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.59\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 53.5956\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 60.465\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12817\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 116.061\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 125.434\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 9.373\vspace{3pt}}}\\\cline{1-2} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 254\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent bet3 homolog. [source:swissprot;acc:o43617]\vspace{3pt}}&&&&&\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 9634.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10976.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1341.22\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent max interacting protein 1 (mxi1 protein). [source:swissprot;acc:p50539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.357\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 23.642\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fyn (ec 2.7.1.112) (p59-fyn) (syn) (slk). [source:swissprot;acc:p06241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 53.607\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 60.4452\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12756\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm\_178862]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent steroid hormone receptor err2 (estrogen-related receptor, beta) (err-beta) (estrogen receptor-like 2) (err beta-2). [source:swissprot;acc:o95718]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 59338.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 68268.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8929.8\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [source:swissprot;acc:o43623]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 69165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52991.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.3052\vspace{3pt}}\\\cline{1-2}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 255\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent c-terminal binding protein 1 (ctbp1). [source:swissprot;acc:q13363]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent 69123.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52967\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.30503\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 39472\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48393.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8921.1\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent mad protein (max dimerizer). [source:swissprot;acc:q05195]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 4455.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5774.03\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1318.08\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent max-interacting transcriptional repressor mad4 (max-associated protein 4) (max dimerization protein 4). [source:swissprot;acc:q14582]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.366\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 23.633\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent poly(a) polymerase alpha (ec 2.7.7.19) (pap) (polynucleotide adenylyltransferase alpha) (fragment). [source:swissprot;acc:p51003]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 132.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 122.835\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 9.321\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ribonucleoside-diphosphate reductase m2 chain (ec 1.17.4.1) (ribonucleotide reductase small chain). [source:swissprot;acc:p31350]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 62.9007\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 70.8854\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12694\vspace{3pt}}\\\cline{1-2}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 256\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent 48.0045\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 54.0843\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12665\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent exocyst complex component sec5. [source:swissprot;acc:q96kp1]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 132.114\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 122.802\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 9.312\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [source:refseq;acc:nm\_017892]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 15465.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 20151\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.303\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 39463.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48362.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8898.2\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.51\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22476\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent max dimerization protein 3; likely ortholog of mouse max dimerization protein 3. [source:refseq;acc:nm\_031300]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 23.629\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent max interacting protein 1 (mxi1 protein). [source:swissprot;acc:p50539]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 4456.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5773.77\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1317.1\vspace{3pt}}\\\cline{3-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.357\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 257\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cartilage oligomeric matrix protein precursor (comp). [source:swissprot;acc:p49747]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 51.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 45.8409\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12591\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 6417.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7858.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22452\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent cleavage and polyadenylation specificity factor, 73 kda subunit (cpsf 73 kda subunit). [source:swissprot;acc:q9ukf6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 132.467\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 123.158\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 9.309\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent huntingtin-interacting protein hypa/fbp11 (fragment). [source:sptrembl;acc:o75404]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 15482.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 20162.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.30229\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent max-interacting transcriptional repressor mad4 (max-associated protein 4) (max dimerization protein 4). [source:swissprot;acc:q14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 4456.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5773.67\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1316.74\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent putative nucleoside diphosphate kinase (ec 2.7.4.6) (ndk) (ndp kinase). [source:swissprot;acc:o60361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 33526\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 42390.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8864.2\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ump-cmp kinase (ec 2.7.4.14) (cytidylate kinase) (deoxycytidylate kinase) (cytidine monophosphate kinase). [source:swissprot;acc:p30085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 242.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 265.697\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 23.557\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 258\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gtp:amp phosphotransferase mitochondrial (ec 2.7.4.10) (ak3) (adenylate kinase 3 alpha like 1). [source:swissprot;acc:q9uij7]\vspace{3pt}}&&&&&\\\hline nd{longtable}
    Legend:
    - Rank is the rank after comparing the two networks
    - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    - Filtered specifies whether we only included the high confidence microarry measurements or not.

    - http://analysis.yellowcouch.org/