Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

    • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Filtered Value Type Gene Rank description green Interaction Map Network Comparison Type red network_comparison
    Results: HTML CSV LaTeX Showing element 501 to 550 of 77072 in total 
    Filtered: 0
    Value Type: Measured
    
\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
126\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcyphosine. [source:swissprot;acc:q13938]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
635.875\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
472.524\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3457\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
fos-related antigen 2. [source:swissprot;acc:p15408]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2407.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
3205.98\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33179\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pp3111 protein. [source:refseq;acc:nm\_022156]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
530\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
789\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
259\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 33a (zinc finger protein kox31) (ha0946). [source:swissprot;acc:q06730]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.69\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2351.62\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.93\vspace{3pt}}\\\cline{1-4}\cline{6-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
127\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alcohol dehydrogenase class iii chi chain (ec 1.1.1.1) (glutathione- dependent formaldehyde dehydrogenase) (ec 1.2.1.1) (fdh). [source:swissprot;acc:p11766]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1759.22\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2017.91\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
258.69\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
lipopolysaccharide-binding protein precursor (lbp). [source:swissprot;acc:p18428]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
64\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
86\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34375\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex 7.2 kda protein (ec 1.10.2.2) (cytochrome c1, nonheme 7 kda protein) (complex iii subunit x) (7.2 kda cytochrome c1-associated protein subunit) (hspc119). [source:swissprot;acc:q9udw1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
511.5\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
680.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3304\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 347 (zinc finger 1111). [source:swissprot;acc:q96se7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.53\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.92\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
128\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
double-stranded rna-specific editase 1 (ec 3.5.-.-) (dsrna adenosine deaminase) (rna editing deaminase 1) (rna editing enzyme 1). [source:swissprot;acc:p78563]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
391\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
294\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32993\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1397.66\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1143.55\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
254.11\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s22 (s22mt) (mrp-s22) (gk002). [source:swissprot;acc:p82650]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60.8613\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
81.504\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33918\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 93 (zinc finger protein htf34). [source:refseq;acc:nm\_145312]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.59\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.51\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.92\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
129\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amiloride-sensitive sodium channel delta-subunit (epithelial na+ channel delta subunit) (delta enac) (nonvoltage-gated sodium channel 1 delta subunit) (scned) (delta nach). [source:swissprot;acc:p51172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
194.326\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
146.219\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32901\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1397.66\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1143.55\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
254.11\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein hspc134 (protein cda04). [source:swissprot;acc:q9by43]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
454.837\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
606.485\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33341\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 157 (hzf22). [source:swissprot;acc:p51786]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.92\vspace{3pt}}\\\cline{1-4}\cline{6-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
130\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
chromodomain y-like protein 2. [source:refseq;acc:nm\_152342]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2799.81\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
3053.31\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
253.5\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
maspin precursor (protease inhibitor 5). [source:swissprot;acc:p36952]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
56\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33333\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 4-kinase alpha (ec 2.7.1.67) (pi4-kinase) (ptdins-4-kinase) (pi4k-alpha). [source:swissprot;acc:p42356]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
937.501\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
707.801\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32453\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 92 (zinc finger protein htf12) (fragment). [source:swissprot;acc:q03936]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.53\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.92\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
131\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
851.77\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
645.504\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.31954\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 1 (ec 3.1.3.48) (protein-tyrosine phosphatase 1b) (ptp-1b). [source:swissprot;acc:p18031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4658.69\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4912.01\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
253.32\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
serpin b11. [source:swissprot;acc:q96p15]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
56\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33333\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 211 (zinc finger protein c2h2-25). [source:swissprot;acc:q13398]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.92\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
132\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic antiproteinase 2 (cap2) (cap-2) (protease inhibitor 8) (serpin b8). [source:swissprot;acc:p50452]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33333\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to zinc finger protein 85 (zinc finger protein hpf4) (htf1). [source:refseq;acc:nm\_145287]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.91\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-dependent calcium channel gamma-5 subunit (neuronal voltage- gated calcium channel gamma-5 subunit). [source:swissprot;acc:q9uf02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2202\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1949.36\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
252.64\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
wd-repeat protein 5 (wd-repeat protein big-3). [source:swissprot;acc:q9ugp9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
191.971\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
251.947\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.31242\vspace{3pt}}\\\cline{1-4}\cline{6-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
133\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2 (paps synthethase 2) (papss 2) (sulfurylase kinase 2) (sk2) (sk 2) [includes: sulfate adenylyltransferase (ec 2.7.7.4) (sulfate adenylate transferase) (sat) (atp-sulfurylase); adenylylsulfate kinase (ec 2.7.1.25) (adenylylsulfate 3'-phosphotransferase) (aps kinase) (adenosine-5'-phosphosulfate 3'-phosphotransferase) (3'- phosphoadenosine-5'-phosphosulfate synthetase)]. [source:swissprot;acc:o95340]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
335\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
252\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32937\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc42-binding protein kinase beta; cdc42-binding protein kinase beta (dmpk-like); mrck beta; dmpk-like. [source:refseq;acc:nm\_006035]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1139\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
874\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3032\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to zinc finger protein 136. [source:refseq;acc:nm\_145295]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.39\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.91\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
testis-specific chromodomain protein y protein 2. [source:swissprot;acc:q9y6f7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2784.59\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
3036.85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
252.26\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
134\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mms19-like (met18 homolog, s. cerevisiae); homolog of yeast mms19; mms19 (met18 s. cerevisiae)-like. [source:refseq;acc:nm\_022362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
346.751\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
260.986\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32862\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
presenilin-like protein 1 (ec 3.4.99.-) (sppl2b protein). [source:swissprot;acc:q8tct7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1139\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
874\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3032\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to dna-binding protein; zinc finger protein 253. [source:refseq;acc:nm\_145297]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.39\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.91\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
testis-specific chromodomain y protein 1. [source:swissprot;acc:q9y6f8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2784.08\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
3036.29\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
252.21\vspace{3pt}}\\\cline{1-3}\cline{6-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
135\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l22 (epstein-barr virus small rna associated protein) (eber associated protein) (eap) (heparin binding protein hbp15). [source:swissprot;acc:p35268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
476.619\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
728.65\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
252.031\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
maguk p55 subfamily member 2 (mpp2 protein) (discs, large homolog 2). [source:swissprot;acc:q14168]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
203.832\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.513\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.30261\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i transcription factor rrn3. [source:refseq;acc:nm\_018427]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
613.614\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
814.485\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32736\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 132. [source:swissprot;acc:p52740]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.36\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.91\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
136\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
154.324\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.834\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.30138\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycine cleavage system h protein, mitochondrial precursor. [source:swissprot;acc:p23434]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1152.06\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
903.767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
248.293\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1150.51\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1526.38\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3267\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 84 (zinc finger protein hpf2). [source:swissprot;acc:p51523]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.39\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2351.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.91\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
137\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(d) polypeptide (rhesus d antigen) (rhxiii) (rh polypeptide 2) (rhpii). [source:swissprot;acc:q02161]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
154.279\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.759\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.30127\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
heat shock factor binding protein 1. [source:swissprot;acc:o75506]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1233.41\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1631.18\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3225\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribonucleoside-diphosphate reductase m1 chain (ec 1.17.4.1) (ribonucleotide reductase large chain). [source:swissprot;acc:p23921]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7276.12\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7520.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
244.66\vspace{3pt}}\\\cline{2-4}\cline{6-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 121 (zinc finger protein 20) (fragment). [source:swissprot;acc:p58317]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1968.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2351.22\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
382.9\vspace{3pt}}\\\cline{1-4}\cline{6-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
138\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1906.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1663.73\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.55\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
154.279\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.759\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.30127\vspace{3pt}}\\\hline
nd{longtable}

    Legend:
    - Rank is the rank after comparing the two networks
    
 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    
 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    
 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    
 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    
 - Filtered specifies whether we only included the high confidence microarry measurements or not.
    - http://analysis.yellowcouch.org/