Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

Proteome Analysis

Below the proteome analysis is presented. The analysis methods are presented in the paper Propagating Differential Gene Expression in Protein Interaction Networks. If you are interested in the most reliable results choose the

  • value_type as 'ranked' since this provides a very robust analysis method.
  • intercation map as 'high confidence'
  • network_comparison type as 'Divided' since this leads to a natural grouping of similar proteins
  • filtered as 'true' since this will only use the microarray measurements that have a sufficiently large confidence level.

  • Navigation/Query Panel:
    Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
    Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
    Results: HTML CSV LaTeX Showing element 1 to 50 of 19268 in total
    Value Type: Ranked
    \def\wcA{0.11111111111111\textwidth} \def\wcB{0.11111111111111\textwidth} \def\wcC{0.11111111111111\textwidth} \def\wcD{0.11111111111111\textwidth} \def\wcE{0.11111111111111\textwidth} \def\wcF{0.11111111111111\textwidth} \def\wcG{0.11111111111111\textwidth} \def\wcH{0.11111111111111\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Filtered\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent adp-ribosylation factor gtpase-activating protein 3 (arf gap 3). [source:swissprot;acc:q9np61]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 4294\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 15915\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 3.70633\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent carboxypeptidase d precursor (ec 3.4.17.-) (gp180). [source:swissprot;acc:o75976]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 16\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 32\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 322\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent 107\vspace{3pt}}}\\\cline{2-2}\cline{4-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\\\cline{2-2}\cline{4-8} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 8906\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 21883\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent 12977\vspace{3pt}}}\\\cline{4-4} &&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&&&\\\cline{2-3}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 5865\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 14977\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.55362\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 24\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.4\vspace{3pt}}\\\cline{1-3}\cline{5-8} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent adp-ribosylation factor gtpase-activating protein 3 (arf gap 3). [source:swissprot;acc:q9np61]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 4294\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 15915\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 11621\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent 107\vspace{3pt}}}\\\cline{2-2}\cline{4-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 322\vspace{3pt}}&\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.47982\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 8906\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 21883\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.45711\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 5865\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 14977\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.55362\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent neurogenic locus notch homolog protein 1 precursor (notch 1) (hn1) (translocation-associated notch protein tan-1). [source:swissprot;acc:p46531]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 9607\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 20617\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 11010\vspace{3pt}}\\\cline{1-2}\cline{4-4}\cline{6-8} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 21866\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 10950\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 10916\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.47982\vspace{3pt}}\\\cline{2-3}\cline{8-8} &\parbox{\wcB}{\vspace{3pt}\noindent cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&&&&&\parbox{\wcH}{\vspace{3pt}\noindent 107\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent neurogenic locus notch homolog protein 1 precursor (notch 1) (hn1) (translocation-associated notch protein tan-1). [source:swissprot;acc:p46531]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 9607\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 20617\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.14604\vspace{3pt}}\\\cline{2-3}\cline{8-8} &\parbox{\wcB}{\vspace{3pt}\noindent neurogenic locus notch homolog protein 2 precursor (notch 2) (hn2). [source:swissprot;acc:q04721]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&&&&&\parbox{\wcH}{\vspace{3pt}\noindent 11010\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent nif3-like protein 1 (amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 1) (my018 protein) (mds015). [source:swissprot;acc:q9gzt8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 4475.84\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 11083.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.47638\vspace{3pt}}\\\cline{2-3}\cline{5-8} &\parbox{\wcB}{\vspace{3pt}\noindent rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 337\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 232\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 105\vspace{3pt}}\\\cline{1-4}\cline{6-8} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.47982\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 107\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 8906\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 21883\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.45711\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 5865\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 14977\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 9112\vspace{3pt}}\\\cline{2-3}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent neurogenic locus notch homolog protein 2 precursor (notch 2) (hn2). [source:swissprot;acc:q04721]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 9607\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 20617\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.14604\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 10363\vspace{3pt}}\\\cline{2-2}\cline{5-8} &\parbox{\wcB}{\vspace{3pt}\noindent rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 337\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 232\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 105\vspace{3pt}}\\\cline{1-3}\cline{6-8} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 22286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 13216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 9070\vspace{3pt}}\\\cline{2-3}\cline{5-8} &\parbox{\wcB}{\vspace{3pt}\noindent lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 330\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.47982\vspace{3pt}}\\\cline{2-3}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent oxysterol binding protein-related protein 6 (osbp-related protein 6) (orp-6). [source:swissprot;acc:q9bzf3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 318\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 240\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 78\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 10363\vspace{3pt}}\\\cline{2-3}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 5510.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 11965.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.17144\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquitously transcribed y chromosome tetratricopeptide repeat protein (ubiquitously transcribed tpr protein on the y chromosome). [source:swissprot;acc:o14607]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 10889.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 19873\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.82499\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 97\vspace{3pt}}\\\cline{1-3}\cline{6-8} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 6\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 22286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 13216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 9070\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 5865\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 14977\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 9112\vspace{3pt}}\\\cline{2-2}\cline{4-8} &\parbox{\wcB}{\vspace{3pt}\noindent oxysterol binding protein-related protein 3 (osbp-related protein 3) (orp-3). [source:swissprot;acc:q9h4l5]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 318\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 240\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent 78\vspace{3pt}}\\\cline{2-3}\cline{8-8} &\parbox{\wcB}{\vspace{3pt}\noindent oxysterol binding protein-related protein 6 (osbp-related protein 6) (orp-6). [source:swissprot;acc:q9bzf3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&&&&&\parbox{\wcH}{\vspace{3pt}\noindent 1.325\vspace{3pt}}\\\cline{2-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 97\vspace{3pt}}\\\cline{2-8} &\parbox{\wcB}{\vspace{3pt}\noindent trinucleotide repeat containing 15. [source:refseq;acc:nm\_015575]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 5575.71\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 9583.37\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.71877\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin protein ligase. [source:refseq;acc:nm\_130466]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 7523\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 15339.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 2.03897\vspace{3pt}}\\\cline{1-2}\cline{6-8} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&&&&\parbox{\wcF}{\vspace{3pt}\noindent 21866\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 10950\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.99689\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8} &\parbox{\wcB}{\vspace{3pt}\noindent fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 11543\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 6812\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent 1.69451\vspace{3pt}}\\\hline nd{longtable}
    Legend:
    - Rank is the rank after comparing the two networks
    - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
    - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
    - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
    - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
    - Filtered specifies whether we only included the high confidence microarry measurements or not.

    - http://analysis.yellowcouch.org/