MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Rank	Network Comparison Type	Gene	Value Type	Hugo	Interaction Map	red	Filtered	green	network_comparison

Results: HTML CSV LaTeX

Showing element 64824 to 64873 of 66312 in total

Filtered  : 1

description	Rank	Network Comparison Type	Value Type	Hugo	Interaction Map	red	green	network_comparison
zinc finger protein 206. [refseq;acc:nm_032805]	4401	Subtracted	Ranked	ZSCAN10	Low confidence	197.793	195.963	1.83
zinc finger protein 207. [swissprot;acc:o43670]	1169	Divided	Measured	ZNF207	High confidence	5470.44	5949.49	1.08757
	1216		Rooted			60.2183	62.9735	1.04575
	1267	Subtracted	Measured			5470.44	5949.49	479.05
	1271		Rooted			60.2183	62.9735	2.7552
	1605		Ranked			221.934	218.658	3.276
	1633	Divided						1.01498
	1668	Subtracted	Squared			24216.1	26647.5	2431.4
	1765	Divided						1.1004
	2835	Subtracted	Measured		Low confidence	8036.53	8266.09	229.56
	2891	Divided						1.02856
	3187	Subtracted	Squared			45914.4	44427.3	1487.1
	3212		Rooted			72.0362	74.2988	2.2626
	3217	Divided						1.03141
	3355		Squared			45914.4	44427.3	1.03347
	3550	Subtracted	Ranked			201.913	199.002	2.911
	3554	Divided						1.01463
zinc finger protein 208. [swissprot;acc:o43345]	1049	Subtracted	Squared	no value		56615.7	54513.3	2102.4
	2424	Divided						1.03857
	4096	Subtracted	Measured			9143.35	9323.2	179.85
	4231		Rooted			76.1821	78.0464	1.8643
	4361	Divided						1.02447
	4390		Measured			9143.35	9323.2	1.01967
	4393		Ranked			197.793	195.963	1.00934
	4411	Subtracted						1.83
zinc finger protein 211 (zinc finger protein c2h2-25). [swissprot;acc:q13398]	1047		Squared	ZNF211		56615.7	54513.3	2102.4
	2422	Divided						1.03857
	4127	Subtracted	Measured			9143.35	9323.19	179.84
	4229		Rooted			76.1821	78.0464	1.8643
	4359	Divided						1.02447
	4388		Measured			9143.35	9323.19	1.01967
	4390		Ranked			197.793	195.963	1.00934
	4409	Subtracted						1.83
zinc finger protein 213 (putative transcription factor cr53). [swissprot;acc:o14771]	873			ZNF213	High confidence	269.954	278.217	8.263
	1061	Divided	Squared		Low confidence	43583	41617.4	1.04723
	1072		Ranked		High confidence	269.954	278.217	1.03061
	1363	Subtracted	Squared		Low confidence	43583	41617.4	1965.6
	2482	Divided	Measured		High confidence	3568.99	3676.61	1.03015
	2542	Subtracted						107.62
	2659	Divided	Squared			17924.3	17435.9	1.02801
	2666	Subtracted						488.4
	2699	Divided	Rooted			44.5861	44.443	1.00322
	2706	Subtracted						0.1431
	4064	Divided	Measured		Low confidence	7595.78	7761.21	1.02178
	4309	Subtracted						165.43
	4476	Divided	Rooted			69.1953	70.7973	1.02315
	4532	Subtracted						1.602
	4933		Ranked			209.176	208.915	0.261
	4934	Divided						1.00125
zinc finger protein 214 (bwscr2 associated zinc-finger protein 1) (baz 1). [swissprot;acc:q9ul59]	1020	Subtracted	Squared	ZNF214		56615.7	54513.3	2102.4

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.