MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Rank	Gene	Value Type	description	Network Comparison Type	Interaction Map	Filtered	red	network_comparison	green

Results: HTML CSV LaTeX

Showing element 1 to 50 of 1892 in total

Network Comparison Type  : Subtracted
Interaction Map  : High confidence
Filtered  : 1
red  : 0
network_comparison  : 0
green  : 0

Rank	Value Type	description
2756	Measured	3 beta-hydroxysteroid dehydrogenase (fragments). [sptrembl;acc:q9udk8]
	Ranked
	Squared
	Rooted
2757	Measured	nucleosome assembly protein 1-like 1 (nap-1 related protein). [swissprot;acc:p55209]
	Ranked
	Squared
	Rooted
2758	Measured	nucleosome assembly protein 1-like 2 (brain-specific protein, x- linked). [swissprot;acc:q9ulw6]
	Ranked
	Squared
	Rooted
2759	Measured	retinoic acid receptor rxr-alpha. [swissprot;acc:p19793]
	Ranked
	Squared
	Rooted
2760	Measured	t-cell acute lymphocytic leukemia-2 protein (tal-2 protein). [swissprot;acc:q16559]
	Ranked
	Squared
	Rooted
2761	Measured	guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [swissprot;acc:q9byb4]
	Ranked
	Squared
	Rooted
2762	Measured	developmentally regulated gtp-binding protein 1 (drg 1). [swissprot;acc:q9y295]
	Ranked
	Squared
	Rooted
2763	Measured	ring finger protein 3. [refseq;acc:nm_006315]
	Ranked
	Squared
	Rooted
2764	Measured	ras-related protein rab-11b (gtp-binding protein ypt3). [swissprot;acc:q15907]
	Ranked
	Squared
	Rooted
2765	Measured	histone h2a.e (h2a/e). [swissprot;acc:q99878]
	Ranked
	Squared
	Rooted
2766	Measured	ss18-like protein 1 (syt homolog-1). [swissprot;acc:o75177]
	Ranked
	Squared
	Rooted
2767	Measured	histone h2a.c/d/i/n/p (h2a.1) (h2a/c) (h2a/d) (h2a/i) (h2a/n) (h2a/p) (h2a.1b). [swissprot;acc:p02261]
	Ranked
	Squared
	Rooted
2768	Measured	histone h2a.x (h2a/x). [swissprot;acc:p16104]
	Ranked

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.