Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Value Type description Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1 to 50 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.4\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
6\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
8\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
9\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
11\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
12\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 3. [source:refseq;acc:nm\_014912]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
288.754\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.554\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.3585\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/