Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2425 to 2474 of 25824 in total
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.125\textwidth} \def\wcB{0.125\textwidth} \def\wcC{0.125\textwidth} \def\wcD{0.125\textwidth} \def\wcE{0.125\textwidth} \def\wcF{0.125\textwidth} \def\wcG{0.125\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 304\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.339\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.986\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.1017\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent coatomer zeta-2 subunit (zeta-2 coat protein) (zeta-2 cop). [source:swissprot;acc:q9p299]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 51527.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43689.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7838.5\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 203.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 182.638\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11517\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 11 (mage-11 antigen). [source:swissprot;acc:p43364]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm\_007195]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 5221.28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 6314.35\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1093.07\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent pre-mrna processing factor 31 homolog; pre-mrna processing factor 31 homolog (yeast). [source:refseq;acc:nm\_015629]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 4855.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5824.52\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19958\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase abl1 (ec 2.7.1.112) (p150) (c-abl). [source:swissprot;acc:p00519]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 28896.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27238\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent splicing factor 4 isoform b; rna-binding protein. [source:refseq;acc:nm\_021164]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 53.6107\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 61.5862\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.9755\vspace{3pt}}\\\cline{1-2}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 305\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent atlastin; guanylate-binding protein 3. [source:refseq;acc:nm\_015915]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent 75.6323\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 67.6572\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.9751\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 203.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 182.638\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11517\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 2 (mage-2 antigen). [source:swissprot;acc:p43356]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ribosomal protein l2. [source:refseq;acc:nm\_015950]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.339\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.986\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.1017\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent neural wiskott-aldrich syndrome protein (n-wasp). [source:swissprot;acc:o00401]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 28918.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36746\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7827.7\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent odd-skipped related 1; odz (odd oz/ten-m) related 1. [source:refseq;acc:nm\_145260]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 3856.29\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 4624.15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19912\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent paxillin. [source:swissprot;acc:p49023]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5221.28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 6314.35\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1093.07\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fyn (ec 2.7.1.112) (p59-fyn) (syn) (slk). [source:swissprot;acc:p06241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 28896.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27238\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 306\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l14 (cag-isl 7). [source:swissprot;acc:p50914]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 242.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.673\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10126\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent hepatocellular carcinoma-associated protein hca1. [source:refseq;acc:nm\_020932]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent kynureninase (ec 3.7.1.3) (l-kynurenine hydrolase). [source:swissprot;acc:q16719]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 8430.03\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 9518.11\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1088.08\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ornithine decarboxylase (ec 4.1.1.17) (odc). [source:swissprot;acc:p11926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 33044.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 40781.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7736.5\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent pnas-18. [source:sptrembl;acc:q9bzu3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 13680.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 11409.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19903\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 28896.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27238\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 56.3935\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 62.8817\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11505\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine protein phosphatase pp1-gamma catalytic subunit (ec 3.1.3.16) (pp-1g). [source:swissprot;acc:p36873]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 127.967\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 120.003\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.964\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 307\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 1-acyl-sn-glycerol-3-phosphate acyltransferase beta (ec 2.3.1.51) (1- agp acyltransferase 2) (1-agpat 2) (lysophosphatidic acid acyltransferase-beta) (lpaat-beta) (1-acylglycerol-3-phosphate o- acyltransferase 2). [source:swissprot;acc:o15120]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 7556.75\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 8636.87\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1080.12\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent aminoadipate-semialdehyde synthase; lysine-ketoglutarate reductase /saccharopine dehydrogenase; lysine-2-oxoglutarate reductase; aminoadipic semialdehyde synthase. [source:refseq;acc:nm\_005763]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 33010.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 40732.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7721.4\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 28896.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36766.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27237\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [source:swissprot;acc:p43360]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent neural wiskott-aldrich syndrome protein (n-wasp). [source:swissprot;acc:o00401]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 66.0989\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 74.0609\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.962\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent serine racemase (ec 5.1.1.-). [source:swissprot;acc:q9gzt4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.673\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10126\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent t-complex protein 1, gamma subunit (tcp-1-gamma) (cct-gamma). [source:swissprot;acc:p49368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 12365.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 14824.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19892\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent transcriptional co-repressor sin3a; transcriptional regulator, sin3a (yeast). [source:refseq;acc:nm\_015477]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 50.4687\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 45.2733\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11476\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 308\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (ec 2.3.1.51) (1- agp acyltransferase 3) (1-agpat 3) (lysophosphatidic acid acyltransferase-gamma) (lpaat-gamma) (1-acylglycerol-3-phosphate o- acyltransferase 3). [source:swissprot;acc:q9nrz7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 30596.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 38919.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27205\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l34. [source:swissprot;acc:p49207]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 242.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.673\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10126\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent ba305p22.3 (breast carcinoma amplified sequence 4). [source:sptrembl;acc:q8ndy6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11852.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10773.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1079.4\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent density-regulated protein (drp) (drp1 protein) (smooth muscle cell associated protein-3) (smap-3). [source:swissprot;acc:o43583]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 50.4687\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 45.2733\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11476\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent necdin. [source:swissprot;acc:q99608]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ornithine decarboxylase-like protein (ec 4.1.1.17) (odc-paralogue) (odc-p). [source:swissprot;acc:q96a70]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 32991.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 40704.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7713\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ribosomal protein s6 kinase, 52kda, polypeptide 1; ribosomal protein s6 kinase, 52kd, polypeptide 1. [source:refseq;acc:nm\_012424]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 65.9938\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 73.9449\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.9511\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent segment polarity protein dishevelled homolog dvl-1 (dishevelled-1) (dsh homolog 1). [source:swissprot;acc:o14640]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4977.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5966.44\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19878\vspace{3pt}}\\\cline{1-2}\cline{4-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 309\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent basic helix-loop-helix domain containing, class b, 5; trinucleotide repeat containing 20. [source:refseq;acc:nm\_152414]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11848.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 10770.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1078.5\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 28900.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36762.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27203\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [source:swissprot;acc:q9y5v3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ornithine decarboxylase antizyme inhibitor. [source:swissprot;acc:o14977]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 32987.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 40698.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7711.1\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 266.673\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10126\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 65.9938\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 73.9449\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 7.9511\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent segment polarity protein dishevelled homolog dvl-2 (dishevelled-2) (dsh homolog 2). [source:swissprot;acc:o14641]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 4977.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5966.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.19855\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent u6 snrna-associated sm-like protein lsm2 (small nuclear ribonuclear protein d homolog) (g7b) (snrnp core sm-like protein sm-x5). [source:swissprot;acc:q9y333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 56.185\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 62.6036\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11424\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 310\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha (ec 2.3.1.51) (1- agp acyltransferase 1) (1-agpat 1) (lysophosphatidic acid acyltransferase-alpha) (lpaat-alpha) (1-acylglycerol-3-phosphate o- acyltransferase 1) (g15 protein). [source:swissprot;acc:q99943]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7551.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 8630.06\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1078.26\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 28901.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 36762.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27198\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/