Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1051 to 1100 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1051\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein dlx-2. [source:swissprot;acc:q07687]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4757.46\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5198.91\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09279\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1052\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein dlx-5. [source:swissprot;acc:p56178]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1053\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fetal brain protein 239 (239fb). [source:swissprot;acc:q15777]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1054\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein dlx-3. [source:swissprot;acc:o60479]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1055\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent activated p21cdc42hs kinase. [source:refseq;acc:nm\_005781]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1056\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitogen-activated protein kinase kinase kinase 7 interacting protein 2 isoform 1; tak1-binding protein 2. [source:refseq;acc:nm\_015093]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1057\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tata element modulatory factor (tmf). [source:swissprot;acc:p82094]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5412.23\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5913.4\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0926\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1058\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent scy1-like 1; telomerase regulation-associated protein; ht019 protein; telomerase regulation-associated protein; n-terminal kinase-like protein; teratoma-associated tyrosine kinase; n-terminal kinase-like. [source:refseq;acc:nm\_020680]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1059\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tubulin-specific chaperone c (tubulin-folding cofactor c) (cfc). [source:swissprot;acc:q15814]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5719.01\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6248.6\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1060\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent putative acyl-coa thioester hydrolase cgi-16 (ec 3.1.2.-). [source:swissprot;acc:q9y305]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1061\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear pore complex protein nup98 (nucleoporin nup98) (98 kda nucleoporin). [source:swissprot;acc:p52948]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5412.23\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5913.4\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1062\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ammecr1 protein. [source:refseq;acc:nm\_015365]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1063\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mrna-associated protein mrnp 41 (rae1 protein homolog). [source:swissprot;acc:p78406]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1064\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dead-box protein. [source:refseq;acc:nm\_018665]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5719.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6248.6\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1065\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-(apurinic or apyrimidinic site) lyase (ec 4.2.99.18) (ap endonuclease 1) (apex nuclease) (apen) (ref-1 protein). [source:swissprot;acc:p27695]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6393.81\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6984.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09245\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1066\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leucyl-trna synthetase. [source:refseq;acc:nm\_020117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5417.06\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5917.79\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09244\vspace{3pt}}\\\cline{1-3}\cline{5-5} \parbox{\wcA}{\vspace{3pt}\noindent 1067\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent probable leucyl-trna synthetase, mitochondrial precursor (ec 6.1.1.4) (leucine--trna ligase) (leurs). [source:swissprot;acc:q15031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5417.07\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 1.09243\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1068\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exocyst complex component sec15a. [source:swissprot;acc:q8tag9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6201.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6774.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09237\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1069\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elongation factor 2 (ef-2). [source:swissprot;acc:p13639]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5494.73\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6001.08\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09215\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1070\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent metabotropic glutamate receptor 2 precursor (mglur2). [source:swissprot;acc:q14416]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1071\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent metabotropic glutamate receptor 3 precursor (mglur3). [source:swissprot;acc:q14832]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1072\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prefoldin subunit 3 (von hippel-lindau binding protein 1) (vhl binding protein-1) (vbp-1) (hibbj46). [source:swissprot;acc:q15765]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5207.39\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5687.2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09214\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1073\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prefoldin subunit 2 (hspc231). [source:swissprot;acc:q9uhv9]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1074\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent uxt protein (ubiquitously expressed transcript protein) (hspc024). [source:swissprot;acc:q9ubk9]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1075\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phosphatidate cytidylyltransferase 1 (ec 2.7.7.41) (cdp-diglyceride synthetase 1) (cdp-diglyceride pyrophosphorylase 1) (cdp- diacylglycerol synthase 1) (cds 1) (ctp:phosphatidate cytidylyltransferase 1) (cdp-dag synthase 1) (cdp-dg synthetase 1). [source:swissprot;acc:q92903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6441.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7034.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09211\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1076\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 4 (na+/sulfate cotransporter sut-1). [source:swissprot;acc:q9ukg4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6439.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7032.19\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09202\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1077\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 3 (sodium-dependent high-affinity dicarboxylate transporter 2) (na(+)/dicarboxylate cotransporter 3) (nadc-3) (hnadc3). [source:swissprot;acc:q8wwt9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6439.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7032.22\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1078\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 1 (renal sodium/sulfate cotransporter) (na(+)/sulfate cotransporter) (hnasi-1). [source:swissprot;acc:q9bzw2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6439.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7032.19\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1079\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 2 (renal sodium/dicarboxylate cotransporter) (na(+)/dicarboxylate cotransporter 1) (nadc-1). [source:swissprot;acc:q13183]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6439.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7032.22\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1080\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 2. [source:swissprot;acc:o15127]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6439.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7031.73\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.092\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1081\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 3. [source:swissprot;acc:o14828]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1082\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 1. [source:swissprot;acc:o15126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6439.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7031.8\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1083\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exocyst complex component sec15b. [source:swissprot;acc:q9y2d4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6213.51\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6785.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09198\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1084\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phosphatidate cytidylyltransferase 2 (ec 2.7.7.41) (cdp-diglyceride synthetase 2) (cdp-diglyceride pyrophosphorylase 2) (cdp- diacylglycerol synthase 2) (cds 2) (ctp:phosphatidate cytidylyltransferase 2) (cdp-dag synthase 2) (cdp-dg synthetase 2). [source:swissprot;acc:o95674]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6437.49\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7029.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09192\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1085\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol-3-phosphate transporter (g-3-p transporter) (g-3-p permease). [source:swissprot;acc:p57057]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6520.28\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7119.28\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09187\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1086\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proline oxidase, mitochondrial precursor (ec 1.5.3.-) (proline dehydrogenase). [source:swissprot;acc:o43272]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1087\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent junction plakoglobin (desmoplakin iii). [source:swissprot;acc:p14923]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5732.73\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6256.63\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09139\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1088\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tax interaction protein 1. [source:refseq;acc:nm\_014604]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1089\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine--pyruvate aminotransferase (ec 2.6.1.51) (spt) (alanine-- glyoxylate aminotransferase) (ec 2.6.1.44) (agt). [source:swissprot;acc:p21549]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6390.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6973.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0912\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1090\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent interleukin enhancer-binding factor 1 (cellular transcription factor ilf-1). [source:swissprot;acc:q01167]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5651.07\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6164.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09086\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1091\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polyadenylate-binding protein 3 (poly(a)-binding protein 3) (pabp 3) (testis-specific poly(a)-binding protein). [source:swissprot;acc:q9h361]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5791.05\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6316.61\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.09075\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1092\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hskin17 protein. [source:refseq;acc:nm\_012311]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1093\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent carnitine o-acetyltransferase (ec 2.3.1.7) (carnitine acetylase) (cat). [source:swissprot;acc:p43155]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1094\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polyadenylate-binding protein 4 (poly(a)-binding protein 4) (pabp 4) (inducible poly(a)-binding protein) (ipabp) (activated-platelet protein-1) (app-1). [source:swissprot;acc:q13310]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1095\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polyadenylate-binding protein 1 (poly(a)-binding protein 1) (pabp 1). [source:swissprot;acc:p11940]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1096\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin protein. [source:refseq;acc:nm\_032559]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5356.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5842.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09072\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1097\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homolog of yeast maf1. [source:refseq;acc:nm\_032272]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6133.83\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6690.18\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0907\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1098\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tumor differentially expressed protein 2. [source:refseq;acc:nm\_178865]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1099\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tumor differentially expressed protein 1 (transmembrane protein sbbi99). [source:swissprot;acc:q13530]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1100\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tumor differentially expressed 1 protein like. [source:swissprot;acc:q9nrx5]\vspace{3pt}}&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/