MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Rank	Value Type	Gene	green	Interaction Map	Filtered	Network Comparison Type	network_comparison	red

Results: HTML CSV LaTeX

Showing element 451 to 500 of 66312 in total

Filtered  : 1

description	Rank	Value Type	green	Interaction Map	Network Comparison Type	network_comparison	red
26s protease regulatory subunit 7 (mss1 protein). [swissprot;acc:p35998]	2321	Ranked	194.732	Low confidence	Divided	1.01866	198.366
	2394		219.014	High confidence	Subtracted	0.822	218.192
	2395				Divided	1.00377
	2407		194.732	Low confidence	Subtracted	3.634	198.366
	4819	Squared	47560.6			398.6	47959.2
	4841				Divided	1.00838
26s protease regulatory subunit 8 (proteasome subunit p45) (thyroid hormone receptor interacting protein 1) (trip1) (msug1 protein) (tat-binding protein homolog 10) (tbp10) (p45/sug). [swissprot;acc:p47210]	453		53788.1	High confidence	Subtracted	5530.3	59318.4
	797		44326.9	Low confidence		2208.3	46535.2
	864				Divided	1.04982
	1637	Ranked	199.408	High confidence		1.01479	202.358
	1682				Subtracted	2.95
	1721	Squared	53788.1		Divided	1.10282	59318.4
	1772	Rooted	76.9113		Subtracted	1.9751	74.9362
	2059				Divided	1.02636
	2149	Ranked	197.22	Low confidence	Subtracted	3.762	200.982
	2163				Divided	1.01908
	2260	Rooted	74.792		Subtracted	2.4749	72.3171
	2297				Divided	1.03422
	2602	Measured	9234.09	High confidence	Subtracted	83.65	9150.44
	2651				Divided	1.00914
	2944		8314.51	Low confidence	Subtracted	225.57	8088.94
	3044				Divided	1.02789
26s protease regulatory subunit s10b (proteasome subunit p42) (p44) (conserved atpase domain protein 44) (cadp44). [swissprot;acc:q92524]	1280	Squared	30113.9	High confidence	Subtracted	2937.1	27176.8
	1577	Measured	6349.04		Divided	1.07181	5923.66
	1599				Subtracted	425.38
	1630	Squared	30113.9		Divided	1.10807	27176.8
	1944	Rooted	64.5421			1.02853	62.7515
	1968				Subtracted	1.7906
	2478	Ranked	216.801		Divided	1.00289	216.177
	2486				Subtracted	0.624
	2526	Measured	8326.51	Low confidence		238.39	8088.12
	2711				Divided	1.02947
	3092	Rooted	74.8438		Subtracted	2.2929	72.5509
	3167				Divided	1.0316
	3429	Squared	44345.7		Subtracted	1427.9	45773.6
	3515	Ranked	197.374		Divided	1.01489	200.312
	3521				Subtracted	2.938
	3537	Squared	44345.7		Divided	1.0322	45773.6
26s proteasome non-atpase regulatory subunit 1 (26s proteasome regulatory subunit s1) (26s proteasome subunit p112). [swissprot;acc:q99460]	830	Ranked	199.229		Subtracted	5.131	204.36
	857				Divided	1.02575
	1146	Squared	42544.1			1.04611	44506
	1162	Rooted	73.5808			1.03812	70.8788
	1182	Squared	29969	High confidence	Subtracted	3108.3	26860.7
	1280	Rooted	73.5808	Low confidence		2.702	70.8788
	1379	Squared	42544.1			1961.9	44506
	1476		29969	High confidence	Divided	1.11572	26860.7
	1862	Measured	6195.48		Subtracted	369.48	5826
	1883				Divided	1.06342
	2129	Rooted	63.5033			1.02418	62.0038
	2140				Subtracted	1.4995

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.