MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	Hugo	Value Type	Rank	description	Network Comparison Type	Interaction Map	Filtered	green	network_comparison	red

Results: HTML CSV LaTeX

Showing element 1 to 50 of 3228 in total

Hugo  : no value
Value Type  : Ranked
Network Comparison Type  : Divided
Interaction Map  : High confidence
Filtered  : 1

Rank	description	green	network_comparison	red
2	mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [swissprot;acc:o60476]	28	1.86667	15
30	serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, alpha isoform (pp2a, subunit b, b-alpha isoform) (pp2a, subunit b, b55-alpha isoform) (pp2a, subunit b, pr55-alpha isoform) (pp2a, subunit b, r2-alpha isoform). [swissprot;acc:q00007]	243.678	1.29991	187.457
41	protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [refseq;acc:nm_030949]	253	1.27273	322
43	jun dimerization protein. [refseq;acc:nm_130469]	160.957	1.2714	204.641
56	guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-7 subunit. [swissprot;acc:o60262]	336.233	1.25998	266.856
63	guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-5 like subunit. [swissprot;acc:q9y3k8]	336.178	1.25973	266.865
85	melanoma-associated antigen 3 (mage-3 antigen) (antigen mz2-d). [swissprot;acc:p43357]	110.265	1.24949	88.2482
88	hepatocellular carcinoma-associated protein hca1. [refseq;acc:nm_020932]
94	melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [swissprot;acc:p43358]
99	melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [swissprot;acc:p43355]
147	nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [refseq;acc:nm_006333]	42.3003	1.2009	50.7983
149	atlastin; guanylate-binding protein 3. [refseq;acc:nm_015915]	170	1.19718	142
152	myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [swissprot;acc:q9y4i1]	46	1.19565	55
168	gaba-a receptor-associated protein. [sptrembl;acc:q9by60]	98.0548	1.18722	82.5916
178	formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [refseq;acc:nm_017892]	194.72	1.1652	226.887
179	huntingtin-interacting protein hypa/fbp11 (fragment). [sptrembl;acc:o75404]	194.79	1.16476	226.884
191	filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [swissprot;acc:p21333]	198.444	1.14179	226.582
215	myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [swissprot;acc:p13533]	126	1.125	112
221	myosin heavy chain, cardiac muscle beta isoform (myhc-beta). [swissprot;acc:p12883]
238	rd protein. [swissprot;acc:p18615]	254.15	1.11785	227.357
247	rna-binding protein. [refseq;acc:nm_019027]	212.41	1.11719	237.302
248	apobec-1 complementation factor isoform 1; apobec-1 stimulating protein; apo-b rna editing protein. [refseq;acc:nm_014576]
271	bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2 (paps synthethase 2) (papss 2) (sulfurylase kinase 2) (sk2) (sk 2) [includes: sulfate adenylyltransferase (ec 2.7.7.4) (sulfate adenylate transferase) (sat) (atp-sulfurylase); adenylylsulfate kinase (ec 2.7.1.25) (adenylylsulfate 3'-phosphotransferase) (aps kinase) (adenosine-5'-phosphosulfate 3'-phosphotransferase) (3'- phosphoadenosine-5'-phosphosulfate synthetase)]. [swissprot;acc:o95340]	267.352	1.10763	241.373
277	40s ribosomal protein s29. [swissprot;acc:p30054]	267.642	1.10665	241.849
281	60s ribosomal protein l17 (l23). [swissprot;acc:p18621]	267.335	1.10557	241.808
288	40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750]	266.078	1.10517	240.758
289	hpaii tiny fragments locus 9c. [refseq;acc:nm_022727]	246.892	1.10486	272.781
293	60s ribosomal protein l23 (l17). [swissprot;acc:p23131]	265.717	1.10356	240.782
297	60s ribosomal protein l7. [swissprot;acc:p18124]	259.984	1.1029	235.727
304	40s ribosomal protein s15 (rig protein). [swissprot;acc:p11174]	266.986	1.1017	242.339
306	60s ribosomal protein l14 (cag-isl 7). [swissprot;acc:p50914]	266.673	1.10126	242.153
317	splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [swissprot;acc:q15393]	204.044	1.09998	224.445
321	c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [sptrembl;acc:q9br02]	265.959	1.09949	241.892
323	60s ribosomal protein l23a. [swissprot;acc:p29316]	265.945	1.09947	241.884
337	60s ribosomal protein l12. [swissprot;acc:p30050]	267.527	1.0983	243.583
338	60s ribosomal protein l12 like protein. [sptrembl;acc:o60886]	267.528
339	dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [sptrembl;acc:q9nq02]	267.527
341	60s ribosomal protein l9. [swissprot;acc:p32969]	263.798	1.09805	240.243
344	40s ribosomal protein s2 (s4) (llrep3 protein). [swissprot;acc:p15880]	265.136	1.0973	241.625
348	adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [swissprot;acc:p27144]	265.696	1.09728	242.14
356	60s ribosomal protein l10a (csa-19). [swissprot;acc:p53025]	266.796	1.09684	243.24
357	60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [swissprot;acc:p27635]	266.661	1.09683	243.12
372	ribosomal protein s6 kinase-like 1. [refseq;acc:nm_031464]	170.42	1.09447	186.52
380	suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [refseq;acc:nm_003169]	264.79	1.09368	242.109
387	40s ribosomal protein s18 (ke-3) (ke3). [swissprot;acc:p25232]	264.11	1.09029	242.238
388	small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [swissprot;acc:p08578]	208.756	1.09015	227.575
396	putative eukaryotic translation initiation factor 1a (eif-1a) (eif- 4c). [swissprot;acc:o75642]	262.34	1.08945	240.801
406	transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [swissprot;acc:q14186]	244.304	1.08731	265.634
410	tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [swissprot;acc:q13888]	253.539	1.0864	233.376
452	ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [sptrembl;acc:q9nu36]	207.972	1.07784	224.161

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.