MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	green	description	Value Type	Interaction Map	network_comparison	Gene	Rank	red	Network Comparison Type

Results: HTML CSV LaTeX

Showing element 1 to 50 of 38536 in total

Filtered  : 0
green  : 0.00001
Network Comparison Type  : Divided

description	Value Type	Interaction Map	network_comparison	Rank	red
brca1 associated protein. [refseq;acc:nm_006768]	Measured	High confidence	1	502	0.00001
	Ranked
	Squared
	Rooted
carbohydrate (n-acetylglucosamine 6-o) sulfotransferase 6; macular dystrophy, corneal, 1; carbohydate sulfotransferase 6; corneal n-acetylglucosamine 6-sulfotransferase. [refseq;acc:nm_021615]	Measured	Low confidence	3700000	22	37
	Squared		32402.4	5	0.324024
	Rooted		608276	6	6.08276
carbohydrate (n-acetylglucosamine-6-o) sulfotransferase 2; carbohydrate (chondroitin 6/keratan) sulfotransferase 2. [refseq;acc:nm_004267]	Measured		3700000	23	37
	Squared		32402.4	6	0.324024
	Rooted		608276	7	6.08276
cobw-like protein. [refseq;acc:nm_018491]	Measured		1	839	0.00001
	Ranked
	Squared
	Rooted
dok-like protein. [refseq;acc:nm_024872]	Measured	High confidence	3500000	31	35
	Squared		28994.1	13	0.289941
	Rooted		591608		5.91608
ero1-like. [refseq;acc:nm_014584]	Measured		8200000	20	82
	Squared		159148	8	1.59148
	Rooted		905539		9.05539
gamma-glutamyltransferase-like activity 4; gamma-glutamyltranspeptidase-like. [refseq;acc:nm_080920]	Measured	Low confidence	1	838	0.00001
	Ranked
	Squared
	Rooted
gamma-glutamyltransferase. [sptrembl;acc:q14390]	Measured			841
	Ranked
	Squared
	Rooted
gamma-glutamyltranspeptidase 1 precursor (ec 2.3.2.2) (gamma- glutamyltransferase 1) (cd224 antigen). [swissprot;acc:p19440]	Measured			842
	Ranked
	Squared
	Rooted
gamma-glutamyltranspeptidase 2 (ec 2.3.2.2) (gamma-glutamyltransferase 2) (fragment). [swissprot;acc:p36268]	Measured			837
	Ranked
	Squared
	Rooted
gamma-glutamyltranspeptidase 5 precursor (ec 2.3.2.2) (gamma- glutamyltransferase 5) (ggt-rel). [swissprot;acc:p36269]	Measured			843
	Ranked
	Squared
	Rooted
h2a histone family, member j isoform 1. [refseq;acc:nm_018267]	Measured	High confidence		501
	Squared
	Rooted
histone h2a.a (h2a/a) (h2a.2). [swissprot;acc:p28001]	Measured			495
	Squared
	Rooted
histone h2a.c/d/i/n/p (h2a.1) (h2a/c) (h2a/d) (h2a/i) (h2a/n) (h2a/p) (h2a.1b). [swissprot;acc:p02261]	Measured			494
	Squared
	Rooted
histone h2a; h2a histone family, member r. [refseq;acc:nm_170745]	Measured			497

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.