Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Gene Filtered Rank description green Network Comparison Type Value Type Interaction Map network_comparison red
Results: HTML CSV LaTeX Showing element 451 to 500 of 9634 in total
Filtered  : 0
Network Comparison Type  : Divided
Value Type  : Ranked
Rank
description
green
Interaction Map
network_comparison
red
226 rab gdp dissociation inhibitor alpha (rab gdi alpha) (gdi-1) (xap-4) (oligophrenin 2). [swissprot;acc:p31150] 16992.9 High confidence 1.10374 15395.7
similar to zinc finger protein 91 (hpf7, htf10) (fragment). [sptrembl;acc:q86w65] 4851.08 Low confidence 1.14027 4254.31
227 tigger transposable element derived 6. [refseq;acc:nm_030953] 11200.2 High confidence 1.10355 12360
zinc finger protein 234 (zinc finger protein hzf4) (fragment). [swissprot;acc:q14588] 4851.42 Low confidence 1.14027 4254.63
228 soluble liver antigen/liver pancreas antigen. [refseq;acc:nm_153825] 11370.4 High confidence 1.10355 10303.5
zinc finger protein 41. [swissprot;acc:p51814] 4851.25 Low confidence 1.14027 4254.47
229 poly (adp-ribose) glycohydrolase. [refseq;acc:nm_003631] 9878.1 High confidence 1.10339 10899.4
zinc finger protein 300. [swissprot;acc:q96re9] 4851.08 Low confidence 1.14027 4254.31
230 tigger transposable element derived 7; jerky (mouse) homolog-like. [refseq;acc:nm_033208] 11207.7 High confidence 1.10323 12364.7
zinc finger protein zfp31 (fragment). [sptrembl;acc:q92971] 4851.08 Low confidence 1.14027 4254.31
231 tigger transposable element derived 1; jerky (mouse) homolog-like. [refseq;acc:nm_145702] 11207.9 High confidence 1.10322 12364.8
zinc finger protein 226. [swissprot;acc:q9nyt6] 4851.67 Low confidence 1.14026 4254.87
232 kynureninase (ec 3.7.1.3) (l-kynurenine hydrolase). [swissprot;acc:q16719] 11240.2 High confidence 1.10271 12394.7
zinc finger protein 33a (zinc finger protein kox31) (ha0946). [swissprot;acc:q06730] 4852.02 Low confidence 1.14026 4255.19
233 60s acidic ribosomal protein p1. [swissprot;acc:p05386] 10560 High confidence 1.1015 9586.97
zinc finger protein 347 (zinc finger 1111). [swissprot;acc:q96se7] 4852.69 Low confidence 1.14025 4255.83
234 transcription factor 4 (immunoglobulin transcription factor 2) (itf-2) (sl3-3 enhancer factor 2) (sef-2). [swissprot;acc:p15884] 18296 High confidence 1.10124 16614
zinc finger protein 93 (zinc finger protein htf34). [refseq;acc:nm_145312] 4852.44 Low confidence 1.14025 4255.59
235 elongation factor 1-alpha 1 (ef-1-alpha-1) (elongation factor 1 a-1) (eef1a-1) (elongation factor tu) (ef-tu). [swissprot;acc:p04720] 16027.9 High confidence 1.10123 14554.5
zinc finger protein 157 (hzf22). [swissprot;acc:p51786] 4852.69 Low confidence 1.14025 4255.83
236 protein phosphatase inhibitor 2 (ipp-2). [swissprot;acc:p41236] 16788.5 High confidence 1.10122 15245.4
zinc finger protein 92 (zinc finger protein htf12) (fragment). [swissprot;acc:q03936] 4852.69 Low confidence 1.14025 4255.83
237 bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2 (paps synthethase 2) (papss 2) (sulfurylase kinase 2) (sk2) (sk 2) [includes: sulfate adenylyltransferase (ec 2.7.7.4) (sulfate adenylate transferase) (sat) (atp-sulfurylase); adenylylsulfate kinase (ec 2.7.1.25) (adenylylsulfate 3'-phosphotransferase) (aps kinase) (adenosine-5'-phosphosulfate 3'-phosphotransferase) (3'- phosphoadenosine-5'-phosphosulfate synthetase)]. [swissprot;acc:o95340] 9067 High confidence 1.10114 9984
zinc finger protein 211 (zinc finger protein c2h2-25). [swissprot;acc:q13398] 4852.69 Low confidence 1.14025 4255.83
238 cyclin-dependent kinases regulatory subunit 1 (cks-1) (sid1334) (pnas-16 / pnas-143). [swissprot;acc:p33551] 13941.7 High confidence 1.0997 12677.7
similar to zinc finger protein 85 (zinc finger protein hpf4) (htf1). [refseq;acc:nm_145287] 4853.29 Low confidence 1.14024 4256.39
239 mto1 protein homolog (cgi-02). [swissprot;acc:q9y2z2] 9795.36 High confidence 1.09969 8907.41
similar to zinc finger protein 136. [refseq;acc:nm_145295] 4853.29 Low confidence 1.14024 4256.39
240 methyltransferase like 2. [refseq;acc:nm_018396] 16326 High confidence 1.09923 17946
similar to dna-binding protein; zinc finger protein 253. [refseq;acc:nm_145297] 4853.29 Low confidence 1.14024 4256.39
241 secreted modular calcium-binding protein 1. [refseq;acc:nm_022137] 12743.3 High confidence 1.09891 14003.7
zinc finger protein 132. [swissprot;acc:p52740] 4853.03 Low confidence 1.14024 4256.15
242 1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [swissprot;acc:q04446] 13895.8 High confidence 1.09822 15260.6
zinc finger protein 84 (zinc finger protein hpf2). [swissprot;acc:p51523] 4853.29 Low confidence 1.14024 4256.39
243 polyadenylate-binding protein 3 (poly(a)-binding protein 3) (pabp 3) (testis-specific poly(a)-binding protein). [swissprot;acc:q9h361] 1373 High confidence 1.09752 1251
zinc finger protein 121 (zinc finger protein 20) (fragment). [swissprot;acc:p58317] 4853.62 Low confidence 1.14023 4256.71
244 keratin associated protein 9.2. [refseq;acc:nm_031961] 11579.9 High confidence 1.09751 10551.1
zinc finger protein af020591. [refseq;acc:nm_014480] 4853.87 Low confidence 1.14023 4256.94
245 cell division protein kinase 3 (ec 2.7.1.-). [swissprot;acc:q00526] 13019 High confidence 1.09702 11867.6
zinc finger protein 20 (zinc finger protein kox13) (dkfzp572p0920). [swissprot;acc:p17024] 4853.87 Low confidence 1.14023 4256.94
246 keratin associated protein 4.3 (fragment). [sptrembl;acc:q9byr4] 11573.7 High confidence 1.09687 10551.6
zinc finger protein 11b (fragment). [swissprot;acc:q06732] 4853.45 Low confidence 1.14023 4256.55
247 keratin associated protein 2-4; keratin associated protein 2.4. [refseq;acc:nm_033184] 11573.7 High confidence 1.09687 10551.6
zinc finger protein 208. [swissprot;acc:o43345] 4853.87 Low confidence 1.14023 4256.94
248 keratin associated protein 1.5. [refseq;acc:nm_031957] 11573.7 High confidence 1.09687 10551.6
zinc finger protein 136. [swissprot;acc:p52737] 4853.62 Low confidence 1.14023 4256.71
249 gonadotropin inducible transcription repressor-1 (giot-1). [swissprot;acc:q8taf7] 4854.04 1.14022 4257.1
keratin, ultra high-sulfur matrix protein a (uhs keratin a) (uhs kera). [swissprot;acc:p26371] 11573.7 High confidence 1.09687 10551.6
250 keratin associated protein 1-3; keratin associated protein 1.3. [refseq;acc:nm_030966]
zinc finger protein 85 (zinc finger protein hpf4) (htf1). [swissprot;acc:q03923] 4854.21 Low confidence 1.14022 4257.26

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/