MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Rank	Gene	Network Comparison Type	description	red	Value Type	green	Interaction Map	Filtered	network_comparison

Results: HTML CSV LaTeX

Showing element 601 to 650 of 1892 in total

Network Comparison Type  : Subtracted
red  : 0
green  : 0
Interaction Map  : High confidence
Filtered  : 1
network_comparison  : 0

Rank	description	Value Type
2906	thousand and one amino acid protein kinase. [refseq;acc:nm_004783]	Measured
		Ranked
		Squared
		Rooted
2907	fructose-bisphosphate aldolase a (ec 4.1.2.13) (muscle-type aldolase) (lung cancer antigen ny-lu-1). [swissprot;acc:p04075]	Measured
		Ranked
		Squared
		Rooted
2908	serine/threonine-protein kinase chk1 (ec 2.7.1.-). [swissprot;acc:o14757]	Measured
		Ranked
		Squared
		Rooted
2909	nk6 transcription factor related, locus 2; nk homeobox family 6, b; glial and testis-specific homeobox protein; homeobox 6b. [refseq;acc:nm_177400]	Measured
		Ranked
		Squared
		Rooted
2910	protein transport protein sec24c (sec24-related protein c). [swissprot;acc:p53992]	Measured
		Ranked
		Squared
		Rooted
2911	bup protein. [refseq;acc:nm_012071]	Measured
		Ranked
		Squared
		Rooted
2912	inositol polyphosphate-5-phosphatase; phosphatidylinositol polyphosphate 5-phosphatase type iv; phosphatidylinositol (4,5) bisphosphate 5-phosphatase. [refseq;acc:nm_019892]	Measured
		Ranked
		Squared
		Rooted
2913	au rna-binding protein/enoyl-coenzyme a hydratase precursor; au rna-binding protein/enoyl-coenzyme a hydratase; 3-methylglutaconyl-coa hydratase; mga type i. [refseq;acc:nm_001698]	Measured
		Ranked
		Squared
		Rooted
2914	lactamase, beta 2. [refseq;acc:nm_016027]	Measured
		Ranked
		Squared
		Rooted
2915	mitochondrial solute carrier protein. [refseq;acc:nm_016612]	Measured
		Ranked
		Squared
		Rooted
2916	ribose-phosphate pyrophosphokinase i (ec 2.7.6.1) (phosphoribosyl pyrophosphate synthetase i) (ppribp) (prs-i). [swissprot;acc:p09329]	Measured
		Ranked
		Squared
		Rooted
2917	t-complex protein 1, zeta subunit (tcp-1-zeta) (cct-zeta) (cct-zeta-1) (tcp20) (htr3). [swissprot;acc:p40227]	Measured
		Ranked
		Squared
		Rooted
2918	nipsnap2 protein (glioblastoma amplified sequence). [swissprot;acc:o75323]	Measured
		Ranked

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.