Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3180 to 3229 of 6456 in total
Value Type: Measured
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1590\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prefoldin subunit 1. [source:swissprot;acc:o60925]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5875.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6302.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 427.01\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1591\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent multisynthetase complex auxiliary component p38 (jtv-1 protein) (pro0992). [source:swissprot;acc:q13155]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6364.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6819.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07155\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent secreted modular calcium-binding protein 2; smooth muscle associated protein 2. [source:refseq;acc:nm\_022138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5875.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6302.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 427.01\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1592\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 11 (26s proteasome regulatory subunit s9) (26s proteasome regulatory subunit p44.5). [source:swissprot;acc:o00231]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5853.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6271.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07153\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 5875.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6302.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 427.01\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1593\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent colorectal mutant cancer protein (mcc protein). [source:swissprot;acc:p23508]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6520.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6946.75\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.92\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proliferating cell nuclear antigen (pcna) (cyclin). [source:swissprot;acc:p12004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4977.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5333.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07152\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1594\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent glycine dehydrogenase [decarboxylating], mitochondrial precursor (ec 1.4.4.2) (glycine decarboxylase) (glycine cleavage system p- protein). [source:swissprot;acc:p23378]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5933.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6358.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.53\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent transportin-sr; importin 12. [source:refseq;acc:nm\_012470]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5184.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5555.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07152\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1595\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent dna polymerase epsilon subunit b (ec 2.7.7.7) (dna polymerase ii subunit b). [source:swissprot;acc:p56282]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3760.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4185.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.52\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 8 precursor (ec 3.4.25.1) (proteasome component c13) (macropain subunit c13) (multicatalytic endopeptidase complex subunit c13). [source:swissprot;acc:p28062]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6351.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6805.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07149\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1596\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cyclic-amp-dependent transcription factor atf-7 (activating transcription factor 7) (transcription factor atf-a). [source:swissprot;acc:p17544]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5659.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6084.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.46\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent enigma protein; lim domain protein. [source:refseq;acc:nm\_005451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5665.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6070.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07148\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1597\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 6-phosphogluconolactonase (ec 3.1.1.31) (6pgl). [source:swissprot;acc:o95336]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6038.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6463.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.44\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 3 subunit 7 (eif-3 zeta) (eif3 p66) (eif3d). [source:swissprot;acc:o15371]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 5665.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6070.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07148\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1598\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent lon protease homolog, mitochondrial precursor (ec 3.4.21.-) (lon protease-like protein) (lonp) (lonhs). [source:swissprot;acc:p36776]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 5068.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5430.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07147\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ribosomal protein l30 isoform a. [source:refseq;acc:nm\_145212]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5923.66\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 6349.04\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 425.38\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1599\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit s10b (proteasome subunit p42) (p44) (conserved atpase domain protein 44) (cadp44). [source:swissprot;acc:q92524]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s24 (s19). [source:swissprot;acc:p16632]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 5184.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5554.97\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07147\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1600\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 14.5 kda translational inhibitor protein (p14.5) (uk114 antigen homolog). [source:swissprot;acc:p52758]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6336.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6788.96\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07145\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent wd-repeat protein bing4. [source:swissprot;acc:o15213]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 4066.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4491.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.09\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1601\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cyclic-amp-dependent transcription factor atf-2 (activating transcription factor 2) (camp response element binding protein cre- bp1) (hb16). [source:swissprot;acc:p15336]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 5660.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6085.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 425.05\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent spectrin beta chain, brain 2 (spectrin, non-erythroid beta chain 2) (beta-iii spectrin). [source:swissprot;acc:o15020]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5232.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5605.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07142\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1602\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 3 (26s proteasome regulatory subunit s3) (proteasome subunit p58). [source:swissprot;acc:o43242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5819.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6244.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.98\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent spectrin beta chain, brain 1 (spectrin, non-erythroid beta chain 1) (beta-ii spectrin) (fodrin beta chain). [source:swissprot;acc:q01082]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5232.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 5605.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.07142\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1603\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent phosphoacetylglucosamine mutase (ec 5.4.2.3) (pagm) (acetylglucosamine phosphomutase) (n-acetylglucosamine-phosphate mutase) (phosphoglucomutase 3). [source:swissprot;acc:o95394]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent porphobilinogen deaminase (ec 4.3.1.8) (hydroxymethylbilane synthase) (hmbs) (pre-uroporphyrinogen synthase) (pbg-d). [source:swissprot;acc:p08397]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4913.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5337.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.88\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1604\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent malonyl-coa decarboxylase, mitochondrial precursor (ec 4.1.1.9) (mcd). [source:swissprot;acc:o95822]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6176.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6617.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07141\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent phospholipid scramblase 2 (pl scramblase 2) (ca(2+)-dependent phospholipid scramblase 2). [source:swissprot;acc:q9nry7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6260.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6685.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.62\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1605\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent itchy homolog e3 ubiquitin protein ligase; atrophin-1 interacting protein 4; itchy (mouse homolog) e3 ubiquitin protein ligase; nfe2-associated polypeptide 1; ubiquitin protein ligase itch. [source:refseq;acc:nm\_031483]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6176.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6617.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07141\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent phospholipid scramblase 3 (pl scramblase 3) (ca(2+)-dependent phospholipid scramblase 3). [source:swissprot;acc:q9nry6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6259.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6684.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.51\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1606\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 5'-methylthioadenosine phosphorylase (ec 2.4.2.28) (mta phosphorylase) (mtapase). [source:swissprot;acc:q13126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5232.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5606.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07138\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent phospholipid scramblase 4 (pl scramblase 4) (ca(2+)-dependent phospholipid scramblase 4). [source:swissprot;acc:q9nrq2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6259.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6684.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.5\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1607\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent putative ribosomal rna methyltransferase 1 (ec 2.1.1.-) (rrna (uridine-2'-o-)-methyltransferase) (jm23 protein). [source:swissprot;acc:q9uet6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5232.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5606.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07138\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent sh2 domain binding protein 1; tpr-containing, sh2-binding phosphoprotein. [source:refseq;acc:nm\_014633]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 4379.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4803.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.31\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1608\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription initiation factor tfiid 20/15 kda subunits (tafii- 20/tafii-15) (tafii20/tafii15). [source:swissprot;acc:q16514]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 7019.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7444.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.28\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin. [source:swissprot;acc:p02248]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 6158.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6597.55\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.07134\vspace{3pt}}}\\\cline{1-2}\cline{4-5} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1609\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 10 (26s proteasome regulatory subunit p28) (gankyrin). [source:swissprot;acc:o75832]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 5826.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6242.44\vspace{3pt}}&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine-protein kinase dcamkl1 (ec 2.7.1.-) (doublecortin- like and cam kinase-like 1). [source:swissprot;acc:o15075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6297.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6721.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 424.03\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1610\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent eif-5a2 protein. [source:refseq;acc:nm\_020390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6222.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6665.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07126\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fes/fps (ec 2.7.1.112) (c-fes). [source:swissprot;acc:p07332]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6079.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6503.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 423.93\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1611\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5497.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5132.35\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07119\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent molybdenum cofactor synthesis protein 2 large subunit (molybdopterin synthase large subunit) (mpt synthase large subunit) (mocs2b) (moco1- b). [source:swissprot;acc:o96007]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6079.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 6503.12\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 423.93\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1612\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent anaphase-promoting complex subunit 10; anaphase-promoting complex 10. [source:refseq;acc:nm\_014885]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 5a (eif-5a) (eif-4d) (rev- binding factor). [source:swissprot;acc:p10159]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6212.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6655.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07116\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1613\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l29 (cell surface heparin binding protein hip). [source:swissprot;acc:p47914]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6079.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6503.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 423.93\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s22 (s22mt) (mrp-s22) (gk002). [source:swissprot;acc:p82650]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6035.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 6464.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.07106\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1614\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent nefa-interacting nuclear protein nip30. [source:refseq;acc:nm\_024946]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fer (ec 2.7.1.112) (p94-fer) (c-fer). [source:swissprot;acc:p16591]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6079.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6503.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 423.93\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1615\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim homeobox transcription factor 1 alpha (lim/homeobox protein lmx1a) (lim-homeobox protein 1.1) (lmx-1.1). [source:swissprot;acc:q8te12]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6035.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6464.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.07106\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/