Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 386 to 435 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 386\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l8. [source:swissprot;acc:p25120]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4533.74\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5279.4\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.16447\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 387\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hepatoma-derived growth factor (hdgf) (high-mobility group protein 1- like 2) (hmg-1l2). [source:swissprot;acc:p51858]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 388\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pwwp domain containing 1; hdgf (hepatoma-derived growth factor) like. [source:refseq;acc:nm\_138574]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 389\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent probable atp-dependent rna helicase p54 (oncogene rck) (dead-box protein 6). [source:swissprot;acc:p26196]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 390\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rw1 protein (fragment). [source:swissprot;acc:q92545]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 391\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tar dna-binding protein-43 (tdp-43). [source:swissprot;acc:q13148]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3658.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3144.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16358\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 392\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3641.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4236.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16339\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 393\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 4e (eif-4e) (eif4e) (mrna cap-binding protein) (eif-4f 25 kda subunit). [source:swissprot;acc:p06730]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4490.28\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5222.25\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.16301\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 394\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bai1-associated protein 3; bai-associated protein 3. [source:refseq;acc:nm\_003933]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 395\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent splicing factor 4 isoform b; rna-binding protein. [source:refseq;acc:nm\_021164]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4532.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5269.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16251\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 396\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm\_015713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6563.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7627.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16205\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 397\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear protein skip (ski-interacting protein) (snw1 protein) (nuclear receptor coactivator ncoa-62). [source:swissprot;acc:q13573]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5367.04\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6233.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16137\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 398\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent xpa-binding protein 2 (hcnp protein) (pp3898). [source:swissprot;acc:q9hcs7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5084.26\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5904.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16125\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 399\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuronal acetylcholine receptor protein, alpha-7 chain precursor. [source:swissprot;acc:p36544]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5201.41\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 4479.76\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.16109\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 400\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylate cyclase, type vi (ec 4.6.1.1) (atp pyrophosphate-lyase) (ca(2+)-inhibitable adenylyl cyclase). [source:swissprot;acc:o43306]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 401\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylate cyclase, type v (ec 4.6.1.1) (atp pyrophosphate-lyase) (adenylyl cyclase) (fragment). [source:swissprot;acc:o95622]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 402\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leucine-rich repeat-containing protein 15 precursor (hlib). [source:swissprot;acc:q8tf66]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 403\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fem-1 homolog b; fem-1-like death receptor binding protein; fem-1 (c.elegans) homolog b. [source:refseq;acc:nm\_015322]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 404\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leucine-rich repeat protein lrrc3 precursor. [source:swissprot;acc:q9by71]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 405\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent laminin gamma-1 chain precursor (laminin b2 chain). [source:swissprot;acc:p11047]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 406\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thymic stromal co-transporter. [source:refseq;acc:nm\_033051]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 407\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent wiskott-aldrich syndrome protein interacting protein (wasp interacting protein) (prpl-2 protein). [source:swissprot;acc:o43516]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6603.41\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7664.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16071\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 408\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dok-like protein. [source:refseq;acc:nm\_024872]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6102.59\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7081.46\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.1604\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 409\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent docking protein 2 (p56(dok-2)) (downstream of tyrosine kinase 2). [source:swissprot;acc:o60496]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 410\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent docking protein 1 (p62(dok)) (downstream of tyrosine kinase 1) (pp62). [source:swissprot;acc:q99704]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 411\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tyrosine-protein kinase frk (ec 2.7.1.112) (nuclear tyrosine protein kinase rak). [source:swissprot;acc:p42685]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 412\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3594.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4169.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.16015\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 413\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vav proto-oncogene. [source:swissprot;acc:p15498]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6644.99\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7707.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15994\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 414\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6744.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5815.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15974\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vav-3 protein. [source:swissprot;acc:q9ukw4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6647.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7706.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15927\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 416\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4509.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5223.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15842\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 417\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4522.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5233.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15708\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 418\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5493.1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6350.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.15603\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 419\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 420\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10235.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11830.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15589\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 421\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vav-2 protein. [source:swissprot;acc:p52735]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6660.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7697.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15582\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 422\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear rna export factor 5 (tap-like protein 1) (tapl-1). [source:swissprot;acc:q9h1b4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5206.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6010.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15425\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 423\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear rna export factor 3 (tap-like protein 3) (tapl-3). [source:swissprot;acc:q9h4d5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5207.03\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6010.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15423\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 424\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear rna export factor 1 (tip associating protein) (tip-associated protein) (mrna export factor tap). [source:swissprot;acc:q9ubu9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5207.78\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6010.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15413\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 425\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3729.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4301.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15354\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 426\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pef protein with a long n-terminal hydrophobic domain (peflin). [source:refseq;acc:nm\_012392]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5942.49\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6853.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15325\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ec 2.1.1.61). [source:swissprot;acc:o75648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 11736.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 13531.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15297\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 428\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nucleolar gtp-binding protein 1 (chronic renal failure gene protein) (gtp-binding protein ngb). [source:swissprot;acc:q9bze4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3721.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4288.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15237\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 429\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vinexin (sh3-containing adaptor molecule-1) (scam-1). [source:swissprot;acc:o60504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6272.91\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7226.06\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15195\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3804.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4379.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15123\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3849.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4431.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15102\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5244.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6036.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15093\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5244.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6036.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15091\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5246.38\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6037.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15077\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5233.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6022.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.1507\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/