Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1 to 50 of 502 in total
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 0
\def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ARFGAP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent adp-ribosylation factor gtpase-activating protein 3 (arf gap 3). [source:swissprot;acc:q9np61]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4294\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 15915\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 3.70633\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent STARD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5865\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 14977\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.55362\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 3\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent nif3-like protein 1 (amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 1) (my018 protein) (mds015). [source:swissprot;acc:q9gzt8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4475.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11083.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.47638\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 4\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8906\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21883\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.45711\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 5\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5510.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11965.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.17144\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 6\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent UBE3B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ubiquitin protein ligase. [source:refseq;acc:nm\_130466]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7523\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 15339.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.03897\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 7\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PERLD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 21866\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10950\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.99689\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 8\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 11525\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 21888\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.89918\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 9\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent TBL1Y\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 10\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FBP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent fructose-1,6-bisphosphatase isozyme 2 (ec 3.1.3.11) (d-fructose-1,6- bisphosphate 1-phosphohydrolase) (fbpase). [source:swissprot;acc:o00757]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7509.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 14178.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.88805\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 11\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ATP9A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent potential phospholipid-transporting atpase iia (ec 3.6.1.-). [source:swissprot;acc:o75110]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11627\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6248\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.86092\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 12\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FPGS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent folylpolyglutamate synthase, mitochondrial precursor (ec 6.3.2.17) (folylpoly-gamma-glutamate synthetase) (fpgs). [source:swissprot;acc:q05932]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9429.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5208.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.81023\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 13\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent heat shock 70 kda protein 1 (hsp70.1) (hsp70-1/hsp70-2). [source:swissprot;acc:p08107]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5210.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9264.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.77804\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 14\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent dystrophin. [source:swissprot;acc:p11532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10232.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 18054.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.76446\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 15\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 19403\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11267\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.72211\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 16\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CCNH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cyclin h (mo15-associated protein) (p37) (p34). [source:swissprot;acc:p51946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12170.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 20670.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.69839\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 17\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11543\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.69451\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 18\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 22286\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 13216\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.68629\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 19\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&&&\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 20\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 21\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ACRC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6313.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10621.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.68236\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 22\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PNPO\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent pyridoxine 5'-phosphate oxidase. [source:refseq;acc:nm\_018129]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 20989\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12479\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.68195\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 23\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent HGS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent hepatocyte growth factor-regulated tyrosine kinase substrate; human growth factor-regulated tyrosine kinase substrate. [source:refseq;acc:nm\_004712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 15520.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9285.44\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.67148\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 24\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 13730.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 8257\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.66289\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 25\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 26\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent DTNBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12128.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7533.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60995\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 27\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ptd016 protein. [source:refseq;acc:nm\_016125]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 18050\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 11234\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60673\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ING5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent p28 ing5. [source:refseq;acc:nm\_032329]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12124.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7562.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.60337\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 29\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PNMT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent phenylethanolamine n-methyltransferase (ec 2.1.1.28) (pnmtase) (noradrenaline n-methyltransferase). [source:swissprot;acc:p11086]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7395\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 11625\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.57201\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 30\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 31\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent LRRFIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent leucine rich repeat (in flii) interacting protein 1. [source:refseq;acc:nm\_004735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8082.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5266.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.53462\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 32\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 13292.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 8691.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.52929\vspace{3pt}}}\\\cline{1-1}\cline{3-3} \parbox{\wcA}{\vspace{3pt}\noindent 33\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 34\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MAPRE2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent microtubule-associated protein, rp/eb family, member 2; t-cell activation protein, eb1 family; apc-binding protein eb1. [source:refseq;acc:nm\_014268]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11284\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 17173.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.52196\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 35\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3208.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4871.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.5182\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 36\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GNB1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 22422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 14964\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.4984\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 37\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3859\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 2582\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.49458\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 38\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CDK8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7230\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10771\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48976\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 39\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 13853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 20536\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48242\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 40\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3845\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.48218\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 41\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent 60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9994.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6758.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.47871\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 42\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent SLC25A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8158\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5530.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.47509\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 43\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GSTT2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 12143.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 8356.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.4533\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 44\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent SERPINB12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 14604.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21138.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.44743\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 14592\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21113.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.44694\vspace{3pt}}\\\cline{1-1}\cline{3-6} \parbox{\wcA}{\vspace{3pt}\noindent 46\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent 60s ribosomal protein l37a. [source:swissprot;acc:p12751]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 12941.7\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 18499.2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.42943\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 47\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent CYP27B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 25-hydroxyvitamin d-1 alpha hydroxylase, mitochondrial precursor (ec 1.14.-.-) (25-ohd-1 alpha-hydroxylase) (25-hydroxyvitamin d3 1- alpha-hydroxylase) (vd3 1a hydroxylase) (p450c1 alpha) (p450vd1- alpha). [source:swissprot;acc:o15528]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 48\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent NDUFA5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nadh-ubiquinone oxidoreductase 13 kda-b subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-b) (ci-13kd-b) (complex i subunit b13). [source:swissprot;acc:q16718]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9830\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6909\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.42278\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 49\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent brain protein 16. [source:refseq;acc:nm\_016458]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6890.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4854.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.41927\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 50\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent COMP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cartilage oligomeric matrix protein precursor (comp). [source:swissprot;acc:p49747]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9249.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 13091.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.41533\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/