MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	green	description	network_comparison	Gene	Value Type	Interaction Map	red	Rank	Network Comparison Type

Results: HTML CSV LaTeX

Showing element 951 to 1000 of 77072 in total

Filtered  : 0

green	description	network_comparison	Value Type	Interaction Map	red	Rank	Network Comparison Type
12.1701	signal-induced proliferation-associated 1-like 1. [refseq;acc:nm_015556]	0.3373	Rooted	High confidence	12.5074	455	Subtracted
		1.02772				432	Divided
12.1722	mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [swissprot;acc:o60476]	1.3321			9.13761	86
				Low confidence		89
		3.03459		High confidence		170	Subtracted
				Low confidence		272
12.2043	transcription factor bteb4 (basic transcription element binding- protein 4) (bte-binding protein 4) (krueppel-like factor 16) (novel sp1-like zinc finger transcription factor 2) (transcription factor nslp2). [swissprot;acc:q9bxk1]	1.15882			10.5317	165	Divided
		1.6726				432	Subtracted
12.2755	amiloride-sensitive sodium channel gamma-subunit (epithelial na+ channel gamma subunit) (gamma enac) (nonvoltage-gated sodium channel 1 gamma subunit) (scneg) (gamma nach). [swissprot;acc:p51170]	0.4846			11.7909	711
		1.0411				570	Divided
12.2759	amiloride-sensitive cation channel 3 isoform a; testis sodium channel 1; proton-gated cation channel subunit; modulatory subunit of asic2a; amiloride-sensitive cation channel 3, testis. [refseq;acc:nm_004769]	0.4852			11.7907	710	Subtracted
		1.04115				569	Divided
12.2882	nanos (fragment). [sptrembl;acc:q8wy41]	1.58009		High confidence	19.4165	51
		7.1283				57	Subtracted
	selenide,water dikinase 2 (ec 2.7.9.3) (selenophosphate synthetase 2) (selenium donor protein 2). [swissprot;acc:q99611]	1.44818			8.48528	60	Divided
				Low confidence		63
		3.80292		High confidence		144	Subtracted
				Low confidence		225
12.2937	syntaxin 1a (neuron-specific antigen hpc-1). [swissprot;acc:q16623]	1.90407	Squared	High confidence	6.45653	120	Divided
		5.83717				406	Subtracted
12.3076	solute carrier family 26, member 11. [refseq;acc:nm_173626]	1.27875	Rooted	Low confidence	15.7383	106	Divided
		3.4307				244	Subtracted
12.3132	alpha-parvin (calponin-like integrin-linked kinase binding protein) (ch-ilkbp). [swissprot;acc:q9nvd7]	1.35362			16.6674	80	Divided
		4.3542				189	Subtracted
12.3994	amiloride-sensitive sodium channel delta-subunit (epithelial na+ channel delta subunit) (delta enac) (nonvoltage-gated sodium channel 1 delta subunit) (scned) (delta nach). [swissprot;acc:p51172]	0.6538			11.7456	660
		1.05566				498	Divided
12.4394	secreted modular calcium-binding protein 1. [refseq;acc:nm_022137]	0.4918		High confidence	11.9476	432	Subtracted
				Low confidence		708
		1.04116		High confidence		372	Divided
				Low confidence		568
12.4629	pepsin a precursor (ec 3.4.23.1). [swissprot;acc:p00790]	0.0399		High confidence	12.5028	488	Subtracted
		1.0032				487	Divided
12.49	succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [swissprot;acc:o14521]	3.94968			3.16228	22
		9.32772				34	Subtracted
12.5026	40s ribosomal protein s28. [swissprot;acc:p25112]	1.0586			13.5612	368
		1.08467				285	Divided
12.5624	dystrophin. [swissprot;acc:p11532]	7.83299	Squared		98.4011	41
		85.8387				290	Subtracted
12.5698	ptd016 protein. [refseq;acc:nm_016125]	2.29492	Rooted		5.47723	30	Divided
				Low confidence		17
		7.09257		High confidence		58	Subtracted
				Low confidence		30
12.6095	dj820b18.1 (similar to nuclear cap binding protein) (fragment). [sptrembl;acc:q8wwk2]	1.43581		High confidence	18.1049	63	Divided
		5.4954				85	Subtracted
12.6188	zona pellucida sperm-binding protein 3 precursor (zona pellucida glycoprotein zp3) (zona pellucida protein c) (sperm receptor) (zp3a/zp3b). [swissprot;acc:p21754]	2.13426	Squared	Low confidence	26.9318	99	Divided
		14.313				744	Subtracted
12.6735	alanine-glyoxylate aminotransferase 2-like 1. [refseq;acc:nm_031279]	1.119	Rooted		14.1816	221	Divided
		1.5081				466	Subtracted
12.7302	b24o18.3 (pom121 membrane glycoprotein (rat homolog)-like 2). [sptrembl;acc:q96kw2]	2.12849	Squared		27.0961	101	Divided
		14.3659				743	Subtracted

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.