MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	description	Rank	Filtered	Value Type	Network Comparison Type	green	Interaction Map	red	network_comparison

Results: HTML CSV LaTeX

Showing element 851 to 900 of 77072 in total

Filtered  : 1

description	Rank	Value Type	Network Comparison Type	green	Interaction Map	red	network_comparison
28s ribosomal protein s18b, mitochondrial precursor (mrp-s18-b) (mrps18b) (mrp-s18-2) (ptd017 protein) (hspc183). [swissprot;acc:q9y676]	3946	Ranked	Subtracted	204.37	Low confidence	201.908	2.462
	3958		Divided				1.01219
	4944	Rooted	Subtracted	71.2064		70.6903	0.5161
	4946		Divided				1.0073
	4972	Measured		7632.4		7611.44	1.00275
	4975		Subtracted				20.96
28s ribosomal protein s18c, mitochondrial precursor (mrp-s18-c) (mrps18c) (mrp-s18-1) (cgi-134). [swissprot;acc:q9y3d5]	2226			8286.09		8037.13	248.96
	2324		Divided				1.03098
	2799	Rooted	Subtracted	74.6485		72.2922	2.3563
	2881		Divided				1.03259
	3329	Ranked		197.742		200.825	1.01559
	3344		Subtracted				3.083
	3800	Squared		44075.7		45374.1	1298.4
	3890		Divided				1.02946
28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [swissprot;acc:q9byn8]	704	Ranked	Subtracted	201.05		206.555	5.505
	730		Divided				1.02738
	747	Rooted		72.965		70.0626	1.04143
	877		Subtracted				2.9024
	1446	Measured	Divided	7969.42		7704.75	1.03435
	1715		Subtracted				264.67
	1908			6797.24	High confidence	6437.24	360
	2026	Squared		35032		33026.7	2005.3
	2037	Rooted		66.1778		64.5014	1.6764
	2071	Measured	Divided	6797.24		6437.24	1.05592
	2082	Rooted		66.1778		64.5014	1.02599
	2449	Squared		35032		33026.7	1.06072
	2617			42162.6	Low confidence	43757.4	1.03782
	2673	Ranked	Subtracted	215.108	High confidence	214.893	0.215
	2675		Divided				1.001
	2715	Squared	Subtracted	42162.6	Low confidence	43757.4	1594.8
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [swissprot;acc:p82933]	340	Ranked		260.544	High confidence	239.75	20.794
	407		Divided				1.08673
	659	Rooted		47.9816		51.7081	1.07767
	901		Subtracted				3.7265
	1662	Squared	Divided	15480.4		13992.7	1.10632
	2313		Subtracted				1487.7
	2530	Measured	Divided	3788.42		3880.5	1.02431
	2593		Subtracted				92.08
	2844	Squared	Divided	41427.9	Low confidence	42943	1.03657
	3063		Subtracted				1515.1
	3986	Measured	Divided	7792.73		7621.65	1.02245
	4226		Subtracted				171.08
	4585	Rooted	Divided	71.3675		69.8928	1.0211
	4610		Subtracted				1.4747
	4991	Ranked		206.342		206.266	0.076
	4992		Divided				1.00037
3 beta-hydroxy-delta 5-c27-steroid oxidoreductase. [refseq;acc:nm_025193]	1079	Squared		42724.1		44737.4	1.04712
	1256		Subtracted				2013.3
	1667	Ranked	Divided	193.866		197.872	1.02066
	1737		Subtracted				4.006

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.