MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Gene	description	Rank	green	Filtered	Value Type	Interaction Map	Network Comparison Type	red	network_comparison

Results: HTML CSV LaTeX

Showing element 651 to 700 of 38536 in total

Network Comparison Type  : Divided

description	Rank	green	Filtered	Value Type	Interaction Map	red	network_comparison
40s ribosomal protein s14 (pro2640). [swissprot;acc:p06366]	4717	209.433	1	Ranked	Low confidence	208.268	1.00559
	4747	70.0583		Rooted		68.8727	1.01721
40s ribosomal protein s15 (rig protein). [swissprot;acc:p11174]	222	23.5258	0			21.0302	1.11867
		11013.2		Ranked	High confidence	12183	1.10622
	251	23.5833		Rooted		21.3142	1.10646
	258	1337.54		Measured		1183.16	1.13048
	270	3201.81		Squared		2569.37	1.24615
	304	266.986	1	Ranked		242.339	1.1017
	309	3771.54	0	Squared	Low confidence	3227.64	1.16851
	314	10922.5		Ranked		12145.3	1.11195
	346	1327.26		Measured		1167.68	1.13666
	376	45.5688	1	Rooted	High confidence	50.2554	1.10285
	1989	13523.5		Squared		12388.6	1.09161
	2067	3411.18		Measured		3602.75	1.05616
	2567	40220.1		Squared	Low confidence	41752.3	1.0381
	4250	209.342		Ranked		207.351	1.0096
	4587	7576.71		Measured		7449.17	1.01712
	4822	70.1036		Rooted		69.1027	1.01448
40s ribosomal protein s15a. [swissprot;acc:p39027]	292	266.414		Ranked	High confidence	241.411	1.10357
	366	45.7763		Rooted		50.5463	1.1042
	1303	40292.9		Squared	Low confidence	42102.8	1.04492
	2008	3435.61		Measured	High confidence	3637.47	1.05876
	2015	13600.6		Squared		12467.2	1.09091
	3989	209.395		Ranked	Low confidence	206.934	1.01189
	4697	7588.58		Measured		7480.2	1.01449
	4864	70.1434		Rooted		69.2629	1.01271
40s ribosomal protein s16. [swissprot;acc:p17008]	391	263.62		Ranked	High confidence	241.828	1.09011
	534	46.8198		Rooted		50.8036	1.08509
	1784	14564.4		Squared		13244.1	1.09969
	2448	3611.05		Measured		3730.53	1.03309
	2770	40856.6		Squared	Low confidence	42362	1.03685
	4134	7653.76		Measured		7496.15	1.02103
	4676	70.3804		Rooted		69.0873	1.01872
	4832	209.034		Ranked		208.276	1.00364
40s ribosomal protein s17. [swissprot;acc:p08708]	144	7.65588	0	Squared		12.5785	1.64299
	151	10.7125		Rooted		9.16047	1.16943
	156	13327.2		Ranked		15228.1	1.14263
	755	146.011		Measured		147.767	1.01203
	1630	200.265	1	Ranked		204.428	1.02079
	1647	73.5316		Rooted		70.9771	1.03599
	2178	43088.4		Squared		44779.1	1.03924
	2603	8094.51		Measured		7859.39	1.02992
40s ribosomal protein s18 (ke-3) (ke3). [swissprot;acc:p25232]	387	264.11		Ranked	High confidence	242.238	1.09029
	531	46.6413		Rooted		50.6537	1.08603
	798	39783.7		Squared	Low confidence	41825.9	1.05133
	1824	14424.1			High confidence	13145.4	1.09727
	2309	211.63		Ranked	Low confidence	207.747	1.01869
	2437	3584.47		Measured	High confidence	3708.67	1.03465
	4873	7489.39			Low confidence	7428.65	1.00818
	4963	69.3391		Rooted		68.9337	1.00588

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.