MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Gene	Value Type	Rank	Network Comparison Type	Filtered	Interaction Map	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 551 to 600 of 29840 in total

Interaction Map  : High confidence

description	Value Type	Rank	Network Comparison Type	Filtered	red	green	network_comparison
4-aminobutyrate aminotransferase, mitochondrial precursor (ec 2.6.1.19) (gamma-amino-n-butyrate transaminase) (gaba transaminase) (gaba aminotransferase) (gaba-at) (gaba-t). [swissprot;acc:p80404]	Rooted	2352	Divided	1	60.9091	61.9962	1.01785
		2363	Subtracted				1.0871
40s ribosomal protein s11. [swissprot;acc:p04643]	Measured	1873	Divided		3618.46	3402.09	1.0636
		2360	Subtracted				216.37
	Ranked	199			241.399	267.088	25.689
		278	Divided				1.10642
	Squared	2016			12389	13514	1.09081
		2517	Subtracted				1125
	Rooted	335	Divided		50.4705	45.5342	1.10841
		585	Subtracted				4.9363
40s ribosomal protein s13. [swissprot;acc:q02546]	Measured	1498	Divided		5414.98	5818.7	1.07456
		1677	Subtracted				403.72
	Ranked	1695			220.899	223.813	2.914
		1722	Divided				1.01319
	Squared	776			21976	25607.9	1.16527
		936	Subtracted				3631.9
	Rooted	2348	Divided		60.5137	61.6019	1.01798
		2361	Subtracted				1.0882
40s ribosomal protein s14 (pro2640). [swissprot;acc:p06366]	Measured	2436	Divided		3708.67	3584.47	1.03465
		2520	Subtracted				124.2
	Ranked	323			242.238	264.11	21.872
		386	Divided				1.09029
	Squared	1823			13145.4	14424.1	1.09727
		2418	Subtracted				1278.7
	Rooted	530	Divided		50.6537	46.6413	1.08603
		824	Subtracted				4.0124
40s ribosomal protein s15 (rig protein). [swissprot;acc:p11174]	Measured	205		0	1183.16	1337.54	154.38
		258	Divided				1.13048
		2067		1	3602.75	3411.18	1.05616
		2391	Subtracted				191.57
	Ranked	205		0	12183	11013.2	1169.8
		219		1	242.339	266.986	24.647
		222	Divided	0	12183	11013.2	1.10622
		304		1	242.339	266.986	1.1017
	Squared	157	Subtracted	0	2569.37	3201.81	632.44
		270	Divided				1.24615
		1989		1	12388.6	13523.5	1.09161
		2497	Subtracted				1134.9
	Rooted	251	Divided	0	21.3142	23.5833	1.10646
		257	Subtracted				2.2691
		376	Divided	1	50.2554	45.5688	1.10285
		651	Subtracted				4.6866
40s ribosomal protein s15a. [swissprot;acc:p39027]	Measured	2008	Divided		3637.47	3435.61	1.05876
		2368	Subtracted				201.86
	Ranked	206			241.411	266.414	25.003
		292	Divided				1.10357
	Squared	2015			12467.2	13600.6	1.09091
		2502	Subtracted				1133.4
	Rooted	366	Divided		50.5463	45.7763	1.1042
		615	Subtracted				4.77

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.