MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	Gene	description	Rank	green	red	Value Type	Network Comparison Type	network_comparison	Interaction Map

Results: HTML CSV LaTeX

Showing element 551 to 600 of 38536 in total

Filtered  : 0
Network Comparison Type  : Divided

description	Rank	green	red	Value Type	network_comparison	Interaction Map
amiloride-sensitive cation channel 3 isoform a; testis sodium channel 1; proton-gated cation channel subunit; modulatory subunit of asic2a; amiloride-sensitive cation channel 3, testis. [refseq;acc:nm_004769]	569	12.2759	11.7907	Rooted	1.04115	Low confidence
	679	12631.5	12377.5	Ranked	1.02052
amiloride-sensitive sodium channel delta-subunit (epithelial na+ channel delta subunit) (delta enac) (nonvoltage-gated sodium channel 1 delta subunit) (scned) (delta nach). [swissprot;acc:p51172]	75	17.4184	5.89418	Squared	2.95519
	129	194.326	146.219	Measured	1.32901
	498	12.3994	11.7456	Rooted	1.05566
	749	12556.6	12412.3	Ranked	1.01163
amiloride-sensitive sodium channel gamma-subunit (epithelial na+ channel gamma subunit) (gamma enac) (nonvoltage-gated sodium channel 1 gamma subunit) (scneg) (gamma nach). [swissprot;acc:p51170]	78	17.0364	5.95216	Squared	2.86222
	140	191.013	147.188	Measured	1.29775
	570	12.2755	11.7909	Rooted	1.0411
	678	12631.8	12377.4	Ranked	1.02055
anaphase promoting complex subunit 11 (hepatocellular carcinoma associated ring finger protein) (hspc214). [swissprot;acc:q9nyg5]	279	9812.39	10614.2		1.08171	High confidence
	329	170319	195397	Squared	1.14724
	332	14167	15411.3	Measured	1.08783
	378	71.5378	74.2677	Rooted	1.03816
	606	44134.3	47173.2	Squared	1.06886	Low confidence
	704	10847.1	10652.1	Ranked	1.01831
	758	4624.67	4679.45	Measured	1.01185
	784	35.7083	35.9836	Rooted	1.00771
anchor attachment protein 1; glycophosphatidylinositol anchor attachment 1; anchor attachment protein 1 (gaa1p, yeast) homolog. [refseq;acc:nm_003801]	12	1933	3190	Ranked	1.65028
	57	4491.06	1025.97	Squared	4.37738
	62	4356	2082	Measured	2.09222
	64	66	45.6289	Rooted	1.44645
apoptosis inhibitor fksg2. [swissprot;acc:q9hau6]	261	170628	135280	Squared	1.2613	High confidence
	276	12125.1	10817.1	Measured	1.12092
	347	17253.9	15175.2	Squared	1.13698	Low confidence
	381	55.9159	53.8801	Rooted	1.03778	High confidence
	427	11582.7	11276.1	Ranked	1.02719
	578	12156	11668.4		1.04179	Low confidence
	598	24.7479	25.6322	Rooted	1.03573
	650	2283.84	2224.76	Measured	1.02656
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [swissprot;acc:p41181]	118	14370.7	12049	Ranked	1.19269	High confidence
	134	6483.52	11625.2	Squared	1.79304
	142	17.849	21.0926	Rooted	1.18172
	164	1354.26	1711.55	Measured	1.26383
	205	933.158	1225.35	Squared	1.31312	Low confidence
	351	609.23	689.713	Measured	1.13211
	616	17.1911	17.7497	Rooted	1.03249
	697	12093	12319.2	Ranked	1.01871
arf gtpase-activating protein. [refseq;acc:nm_133446]	70	0.324024	1.03101	Squared	3.18189
	74	37	66	Measured	1.78378
	87	6.08276	8.12404	Rooted	1.33558
	268	16969	14890	Ranked	1.13962
ariadne-2 protein homolog (ari-2) (triad1 protein) (ht005). [swissprot;acc:o95376]	52	4554.5	3284		1.38688	High confidence
	211	42.3517	48.2208	Rooted	1.13858
		2076.5	2464	Measured	1.18661
	324	1500.84	1742.44	Squared	1.16098
	614	57580.1	61333		1.06518	Low confidence
	629	4967.68	5116.41	Measured	1.02994
	636	33.9829	34.9685	Rooted	1.029
	652	11715.9	11440.9	Ranked	1.02404

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.