Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Gene Filtered Rank green description Network Comparison Type Value Type Interaction Map red network_comparison
Results: HTML CSV LaTeX Showing element 501 to 550 of 9634 in total
Filtered  : 0
Network Comparison Type  : Divided
Value Type  : Ranked
Rank
green
description
Interaction Map
red
network_comparison
251 4854.46 zinc finger protein 93 (zinc finger protein htf34) (fragment). [swissprot;acc:p35789] Low confidence 4257.49 1.14022
11573.6 keratin associated protein 4-10; keratin associated protein 4.10. [refseq;acc:nm_033060] High confidence 10551.6 1.09686
252 4854.63 zinc finger protein zfp. [refseq;acc:nm_018651] Low confidence 4257.65 1.14021
11573.5 keratin associated protein 4-14; keratin associated protein 4.14. [refseq;acc:nm_033059] High confidence 10551.6 1.09685
253 4854.63 krab zinc finger protein. [sptrembl;acc:q96jc4] Low confidence 4257.65 1.14021
11573.5 keratin associated protein 4.9 (fragment). [sptrembl;acc:q9byq8] High confidence 10551.6 1.09685
254 4854.79 zinc finger protein loc163140 (fragment). [sptrembl;acc:q86wm6] Low confidence 4257.81 1.14021
11573.5 keratin associated protein 4-12; keratin associated protein 4.12. [refseq;acc:nm_031854] High confidence 10551.6 1.09685
255 4855.04 zinc finger protein 431. [swissprot;acc:q8tf32] Low confidence 4258.04 1.14021
11573.5 star-related lipid transfer protein 6 (stard6) (start domain- containing protein 6). [swissprot;acc:p59095] High confidence 10551.6 1.09685
256 4855.04 zinc finger protein 267 (zinc finger protein hzf2). [swissprot;acc:q14586] Low confidence 4258.04 1.14021
11573.4 espin. [refseq;acc:nm_031475] High confidence 10551.6 1.09684
257 4855.04 zinc finger protein 180 (hhz168). [swissprot;acc:q9ujw8] Low confidence 4258.04 1.14021
11566.4 keratin associated protein 9-4; keratin associated protein 9.4. [refseq;acc:nm_033191] High confidence 10552.2 1.09611
258 4854.79 zinc finger protein 28 homolog (zfp-28) (kruppel-like zinc finger factor x6). [swissprot;acc:q8nhy6] Low confidence 4257.81 1.14021
14193.6 40s ribosomal protein s28. [swissprot;acc:p25112] High confidence 12967.1 1.09459
259 4855.04 zinc finger protein 79 (znfpt7) (fragment). [swissprot;acc:q15937] Low confidence 4258.04 1.14021
9549.77 adenylyl cyclase-associated protein 2 (cap 2). [swissprot;acc:p40123] High confidence 10438.3 1.09304
260 4855.37 zinc finger protein 463; c2h2-like zinc finger protein. [refseq;acc:nm_018555] Low confidence 4258.35 1.1402
11392.6 40s ribosomal protein s4, y isoform 2. [swissprot;acc:q8td47] High confidence 12447.6 1.0926
261 4856.2 zinc finger protein 126 (hzf-2) (fragment). [swissprot;acc:p35275] Low confidence 4259.13 1.14019
11393.9 40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750] High confidence 12448.9 1.09259
262 3778 sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [refseq;acc:nm_016538] 3464 1.09065
4856.77 zinc finger protein 345 (zinc finger protein hzf10). [swissprot;acc:q14585] Low confidence 4259.67 1.14018
263 4856.36 zinc finger protein 253 (bone marrow zinc finger 1) (bmzf-1). [swissprot;acc:o75346] 4259.28
14801.2 dj820b18.1 (similar to nuclear cap binding protein) (fragment). [sptrembl;acc:q8wwk2] High confidence 13573.3 1.09046
264 4857.75 zinc finger protein 135. [swissprot;acc:p52742] Low confidence 4260.59 1.14016
10935.1 arsenical pump-driving atpase (ec 3.6.3.16) (arsenite-translocating atpase) (arsenical resistance atpase) (arsenite-transporting atpase) (arsa) (asna-i). [swissprot;acc:o43681] High confidence 10037.1 1.08947
265 4858.48 zinc finger protein 271 (zinc finger protein hzf7) (zinc finger protein znfphex133). [swissprot;acc:q14591] Low confidence 4261.28 1.14015
14874 glycogenin-2 (ec 2.4.1.186) (gn-2) (gn2). [swissprot;acc:o15488] High confidence 13653.8 1.08937
266 4864.77 zinc finger protein 426; hypothetical protein mgc2663. [refseq;acc:nm_024106] Low confidence 4267.19 1.14004
14685.4 transcription factor btf3 homolog 3. [swissprot;acc:q13892] High confidence 13483.3 1.08915
267 8772.02 transcription initiation factor tfiid 135 kda subunit (tafii-135) (tafii135) (tafii-130) (tafii130). [swissprot;acc:o00268] 8054.34 1.0891
10432.9 sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [swissprot;acc:q99961] Low confidence 9151.76 1.13999
268 13134.5 maguk p55 subfamily member 2 (mpp2 protein) (discs, large homolog 2). [swissprot;acc:q14168] High confidence 14257.4 1.08549
16969 arf gtpase-activating protein. [refseq;acc:nm_133446] Low confidence 14890 1.13962
269 11482.6 ischemia/reperfusion inducible protein. [refseq;acc:nm_024640] High confidence 12463.5 1.08542
16969 up-regulated in liver cancer 1; similar to development- and differentiation-enhancing factor 2. [refseq;acc:nm_017707] Low confidence 14890 1.13962
270 9891.37 ethanolamine-phosphate cytidylyltransferase (ec 2.7.7.14) (phosphorylethanolamine transferase) (ctp:phosphoethanolamine cytidylyltransferase). [swissprot;acc:q99447] High confidence 10735.1 1.0853
15399 acidic leucine-rich nuclear phosphoprotein 32 family member c (tumorigenic protein pp32r1). [swissprot;acc:o43423] Low confidence 17542 1.13916
271 9891.37 myosin light chain 1, embryonic muscle/atrial isoform (pro1957). [swissprot;acc:p12829] High confidence 10735.1 1.0853
15399 acidic leucine-rich nuclear phosphoprotein 32 family member d (tumorigenic protein pp32r2). [swissprot;acc:o95626] Low confidence 17542 1.13916
272 7759.61 sterol regulatory element binding protein-2 (srebp-2) (sterol regulatory element-binding transcription factor 2). [swissprot;acc:q12772] High confidence 7163.55 1.08321
15716.7 maguk p55 subfamily member 2 (mpp2 protein) (discs, large homolog 2). [swissprot;acc:q14168] Low confidence 13821.1 1.13715
273 11770.9 wiskott-aldrich syndrome protein family member 3 (wasp-family protein member 3) (verprolin homology domain-containing protein 3). [swissprot;acc:q9upy6] High confidence 12748.1 1.08302
16177.4 pp3111 protein. [refseq;acc:nm_022156] Low confidence 14235.1 1.13644
274 11298.4 disks large-associated protein 2 (dap-2) (sap90/psd-95-associated protein 2) (sapap2) (psd-95/sap90 binding protein 2) (fragment). [swissprot;acc:q9p1a6] High confidence 10432.4 1.08301
15008.1 piwi-like 2; miwi like. [refseq;acc:nm_018068] Low confidence 13206.7 1.1364
275 11674.1 cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [swissprot;acc:q10570] High confidence 10783 1.08264
19621 jumonji protein. [swissprot;acc:q92833] Low confidence 22296.2 1.13634

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/