Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo Value Type description Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 59074 to 59123 of 66312 in total
Interaction Map: Low confidence
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4157\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP2B4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
plasma membrane calcium-transporting atpase 4 (ec 3.6.3.8) (pmca4) (plasma membrane calcium pump isoform 4) (plasma membrane calcium atpase isoform 4). [source:swissprot;acc:p23634]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.099\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
198.993\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.106\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BRP44L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
brain protein 44-like protein (hspc040) (cgi-129) (pnas-115). [source:swissprot;acc:q9y5u8]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
40961.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
39830.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1131.4\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MARCH8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cellular modulator of immune recognition. [source:refseq;acc:nm\_145021]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
69.3881\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
71.1646\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0256\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUMB\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
numb protein homolog (h-numb) (protein s171). [source:swissprot;acc:p49757]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7771.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7949.28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.88\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SALL2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
sal-like protein 2 (zinc finger protein sall2) (hsal2). [source:swissprot;acc:q9y467]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7871.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.89\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SUMO3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquitin-like protein smt3a. [source:swissprot;acc:p55854]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
46470.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45276.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02638\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TAS1R1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
krueppel-related zinc finger protein 3 (hkr3 protein). [source:swissprot;acc:p10074]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
76.182\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
78.0463\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
1.8643\vspace{3pt}}}\\\cline{1-2}\cline{4-4}\cline{6-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4158\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
zinc finger protein zfd25. [source:swissprot;acc:q9uii5]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
76.1821\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
78.0464\vspace{3pt}}&\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ANK2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
ankyrin 2 (brain ankyrin) (ankyrin b) (ankyrin, nonerythroid). [source:swissprot;acc:q01484]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
202.624\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
200.519\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0105\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{8-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ANK3\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ankyrin 3 (ank-3) (ankyrin g). [source:swissprot;acc:q12955]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcH}{\vspace{3pt}\noindent
2.105\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARFIP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
arfaptin 2 (partner of rac1) (por1 protein). [source:swissprot;acc:p53365]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7871.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.93\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cyclin m3; ancient conserved domain protein 3. [source:refseq;acc:nm\_017623]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
47744.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
46613.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1130.9\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HADHB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
trifunctional enzyme beta subunit, mitochondrial precursor (tp-beta) [includes: 3-ketoacyl-coa thiolase (ec 2.3.1.16) (acetyl-coa acyltransferase) (beta-ketothiolase)]. [source:swissprot;acc:p55084]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
72.1412\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.9882\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0256\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
laminin beta-1 chain precursor (laminin b1 chain). [source:swissprot;acc:p07942]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7915.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8093.54\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC26A11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
solute carrier family 26, member 11. [source:refseq;acc:nm\_173626]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45411.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
44244.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02638\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4159\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ankyrin 2 (brain ankyrin) (ankyrin b) (ankyrin, nonerythroid). [source:swissprot;acc:q01484]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.624\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
200.519\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.105\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cyclin m1; ancient conserved domain protein 1. [source:refseq;acc:nm\_020348]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
47743.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
46612.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1130.7\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXB8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein hox-b8 (hox-2d) (hox-2.4). [source:swissprot;acc:p17481]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7871.13\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.88\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKACB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
camp-dependent protein kinase, beta-catalytic subunit (ec 2.7.1.37) (pka c-beta). [source:swissprot;acc:p22694]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
198.273\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
196.216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.01048\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RFXANK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
dna-binding protein rfxank (regulatory factor x subunit b) (rfx-b) (ankyrin repeat family a protein 1). [source:swissprot;acc:o14593]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7826.93\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8004.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.67\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TIMM10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
mitochondrial import inner membrane translocase subunit tim10. [source:swissprot;acc:q9y5j8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.7534\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.5905\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0256\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
VPS39\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
vam6/vps39-like protein (hvam6p). [source:swissprot;acc:q96jc1]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
42407.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
41318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02636\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ZNF738\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
zinc finger protein 431. [source:swissprot;acc:q8tf32]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
76.1821\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
78.0464\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
1.8643\vspace{3pt}}}\\\cline{1-2}\cline{4-4}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4160\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
f23269\_2. [source:sptrembl;acc:o75290]\vspace{3pt}}&&&&\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
cyclin m4; ancient conserved domain protein 4. [source:refseq;acc:nm\_020184]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
47741\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
46611\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1130\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNTNAP5\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
caspr5 protein isoform 1. [source:refseq;acc:nm\_130773]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42407.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
41318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02636\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EMX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein emx1 (fragment). [source:swissprot;acc:q04741]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
196.006\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
193.901\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.105\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
IK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red protein (rer protein) (ik factor) (cytokine ik). [source:swissprot;acc:q13123]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.1822\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02559\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKACA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
camp-dependent protein kinase, alpha-catalytic subunit (ec 2.7.1.37) (pka c-alpha). [source:swissprot;acc:p17612]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
198.28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
196.223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.01048\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ROD1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
rod1 regulator of differentiation 1; fission yeast differentiation regulator; regulator of differentiation (in s. pombi) 1; regulator of differentiation (in s. pombe) 1. [source:refseq;acc:nm\_005156]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7871.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
STAMBPL1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam (amsh) like protein. [source:refseq;acc:nm\_020799]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7382.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7204.94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.56\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4161\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
dj54b20.4 (novel krab box containing c2h2 type zinc finger protein). [source:sptrembl;acc:q96qh7]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
76.1821\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
78.0464\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.8643\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNTNAP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
contactin associated protein-like 4 precursor (cell recognition molecule caspr4). [source:swissprot;acc:q9c0a0]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42407.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
41318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02636\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
hepatocyte nuclear factor 3-beta (hnf-3b) (forkhead box protein a2). [source:swissprot;acc:q9y261]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
205.289\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
203.186\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.103\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NEDD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquitin-protein ligase nedd-4 (ec 6.3.2.-). [source:swissprot;acc:p46934]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
45822\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
44692\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1130\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUAK1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
probable serine/threonine-protein kinase kiaa0537 (ec 2.7.1.-). [source:swissprot;acc:o60285]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.7522\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.5875\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02558\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 1 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 1). [source:swissprot;acc:p50897]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7826.56\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8004.07\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.51\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKACG\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
camp-dependent protein kinase, gamma-catalytic subunit (ec 2.7.1.37) (pka c-gamma). [source:swissprot;acc:p22612]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
198.254\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
196.202\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.01046\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PTBP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
polypyrimidine tract binding protein 2; neural polypyrimidine tract binding protein; ptb-like protein. [source:refseq;acc:nm\_021190]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7871.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4162\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
207.355\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
209.52\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.01044\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
secreted modular calcium-binding protein 1. [source:refseq;acc:nm\_022137]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
42835.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
41705.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1129.8\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
similar to zinc finger protein 136. [source:refseq;acc:nm\_145295]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
76.1821\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
78.0464\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.8643\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATN1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
atrophin-1 (dentatorubral-pallidoluysian atrophy protein). [source:swissprot;acc:p54259]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7871.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.89\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
C1orf179\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
hyporthetical protein mgc27169. [source:refseq;acc:nm\_176782]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8135.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8312.47\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
177.42\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNTNAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
contactin associated protein 1 precursor (caspr) (caspr1) (neurexin 4) (neurexin iv) (p190). [source:swissprot;acc:p78357]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42407.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
41318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02636\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXQ1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
forkhead box protein q1 (hepatocyte nuclear factor 3 forkhead homolog 1) (hnf-3/forkhead-like protein 1) (hfh-1). [source:swissprot;acc:q9c009]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
207.659\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
205.56\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.099\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MEMO1P\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein cgi-27 (c21orf19-like protein). [source:swissprot;acc:q9y316]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.5843\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
72.3876\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02555\vspace{3pt}}\\\cline{1-2}\cline{4-8}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4163\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
zinc finger protein 44 (zinc finger protein kox7) (gonadotropin inducible transcription repressor-2) (giot-2). [source:swissprot;acc:p15621]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
76.1821\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
78.0464\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.8643\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARFIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
arfaptin 1. [source:swissprot;acc:p53367]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7871.26\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8033.99\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.02067\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CDH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
207.356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
209.52\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.01044\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/