Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Filtered Value Type Rank Gene description Network Comparison Type green Interaction Map red network_comparison
Results: HTML CSV LaTeX Showing element 451 to 500 of 38536 in total 
Filtered	0
Value Type	Measured
Network Comparison Type	Divided

Rank	description	green	Interaction Map	red	network_comparison	
226	cleavage stimulation factor, 64 kda subunit (cstf 64 kda subunit) (cf-1 64 kda subunit). [source:swissprot;acc:p33240]	758.411	High confidence	658.544	1.15165	
226	zinc finger protein 33a (zinc finger protein kox31) (ha0946). [source:swissprot;acc:q06730]	1968.69	Low confidence	2351.62	1.19451	
227	similar to zinc finger protein 91 (hpf7, htf10) (fragment). [source:sptrembl;acc:q86w65]	1968.91	Low confidence	2351.86	1.1945	
227	transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]	369.011	High confidence	424.258	1.14972	
228	sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [source:swissprot;acc:q99961]	4696.36	High confidence	4089.65	1.14835	
228	zinc finger protein 234 (zinc finger protein hzf4) (fragment). [source:swissprot;acc:q14588]	1968.83	Low confidence	2351.77	1.1945	
229	dj718p11.1.2 (novel class ii aminotransferase similar to serine palmotyltransferase (isoform 2)) (fragment). [source:sptrembl;acc:q9ugb5]	368.317	High confidence	320.752	1.14829	
229	zinc finger protein 41. [source:swissprot;acc:p51814]	1968.87	Low confidence	2351.81	1.1945	
230	trans-prenyltransferase; polyprenyl pyrophosphate synthetase. [source:refseq;acc:nm_014317]	1718.6	High confidence	1498.17	1.14713	
230	zinc finger protein 300. [source:swissprot;acc:q96re9]	1968.91	Low confidence	2351.86	1.1945	
231	alcohol dehydrogenase class iii chi chain (ec 1.1.1.1) (glutathione- dependent formaldehyde dehydrogenase) (ec 1.2.1.1) (fdh). [source:swissprot;acc:p11766]	1759.22	High confidence	2017.91	1.14705	
231	zinc finger protein zfp31 (fragment). [source:sptrembl;acc:q92971]	1968.91	Low confidence	2351.86	1.1945	
232	60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]	1906.28	High confidence	1663.73	1.14579	
232	zinc finger protein 286. [source:swissprot;acc:q9hbt8]	1969.01	Low confidence	2351.96	1.19449	
233	maguk p55 subfamily member 2 (mpp2 protein) (discs, large homolog 2). [source:swissprot;acc:q14168]	399.534	High confidence	348.823	1.14538	
233	zinc finger protein 7 (zinc finger protein kox4) (zinc finger protein hf.16). [source:swissprot;acc:p17097]	1969.01	Low confidence	2351.96	1.19449	
234	wiskott-aldrich syndrome protein family member 3 (wasp-family protein member 3) (verprolin homology domain-containing protein 3). [source:swissprot;acc:q9upy6]	4550.64	High confidence	5202.89	1.14333	
234	zinc finger protein 304. [source:swissprot;acc:q9hcx3]	1969.05	Low confidence	2352.01	1.19449	
235	integrin beta-3 precursor (platelet membrane glycoprotein iiia) (gpiiia) (cd61 antigen). [source:swissprot;acc:p05106]	1843.92	High confidence	1612.86	1.14326	
235	zinc finger protein 83 (zinc finger protein hpf1). [source:swissprot;acc:p51522]	1968.97	Low confidence	2351.92	1.19449	
236	f23269_2. [source:sptrembl;acc:o75290]	1969.11	Low confidence	2352.07	1.19448	
236	peroxisomal acyl-coenzyme a thioester hydrolase 2a (ec 3.1.2.2) (peroxisomal long-chain acyl-coa thioesterase 2) (zap128). [source:swissprot;acc:p49753]	3103.01	High confidence	2715.75	1.1426	
237	dj54b20.4 (novel krab box containing c2h2 type zinc finger protein). [source:sptrembl;acc:q96qh7]	1969.25	Low confidence	2352.23	1.19448	
237	p28 ing5. [source:refseq;acc:nm_032329]	2243.69	High confidence	2551.23	1.13707	
238	casein kinase i alpha s-like. [source:refseq;acc:nm_145203]	1933.94	High confidence	2198.47	1.13678	
238	zinc finger protein 415. [source:refseq;acc:nm_018355]	1969.15	Low confidence	2352.12	1.19448	
239	guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]	434.366	High confidence	382.142	1.13666	
239	zinc finger protein 35 (zinc finger protein hf.10). [source:swissprot;acc:p13682]	1969.29	Low confidence	2352.27	1.19448	
240	putative eukaryotic translation initiation factor 1a (eif-1a) (eif- 4c). [source:swissprot;acc:o75642]	1676.18	High confidence	1475.83	1.13575	
240	zinc finger protein 10 (zinc finger protein kox1) (fragment). [source:swissprot;acc:p21506]	1969.19	Low confidence	2352.16	1.19448	
241	keratin associated protein 9.2. [source:refseq;acc:nm_031961]	1079.01	High confidence	1225.47	1.13574	
241	zinc finger protein 225. [source:swissprot;acc:q9uk10]	1969.19	Low confidence	2352.16	1.19448	
242	splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]	642.343	High confidence	729.216	1.13524	
242	zinc finger protein 256 (bone marrow zinc finger 3) (bmzf-3). [source:swissprot;acc:q9y2p7]	1969.19	Low confidence	2352.16	1.19448	
243	keratin associated protein 4.3 (fragment). [source:sptrembl;acc:q9byr4]	1079.36	High confidence	1225.09	1.13502	
243	zinc finger protein 214 (bwscr2 associated zinc-finger protein 1) (baz 1). [source:swissprot;acc:q9ul59]	1969.19	Low confidence	2352.16	1.19448	
244	dj54b20.2 (novel krab box containing c2h2 type zinc finger protein) (fragment). [source:sptrembl;acc:q96qh9]	1969.25	Low confidence	2352.23	1.19448	
244	keratin associated protein 2-4; keratin associated protein 2.4. [source:refseq;acc:nm_033184]	1079.36	High confidence	1225.09	1.13502	
245	keratin associated protein 1.5. [source:refseq;acc:nm_031957]	1079.36	High confidence	1225.09	1.13502	
245	zinc finger protein 165 (ld65). [source:swissprot;acc:p49910]	1969.19	Low confidence	2352.16	1.19448	
246	ba526d8.4 (novel krab box containing c2h2 type zinc finger protein) (fragment). [source:sptrembl;acc:q9h559]	1969.25	Low confidence	2352.23	1.19448	
246	keratin, ultra high-sulfur matrix protein a (uhs keratin a) (uhs kera). [source:swissprot;acc:p26371]	1079.36	High confidence	1225.09	1.13502	
247	dj153g14.3 (novel c2h2 type zinc finger protein) (fragment). [source:sptrembl;acc:q9ujn7]	1969.11	Low confidence	2352.07	1.19448	
247	keratin associated protein 1-3; keratin associated protein 1.3. [source:refseq;acc:nm_030966]	1079.36	High confidence	1225.09	1.13502	
248	keratin associated protein 4-10; keratin associated protein 4.10. [source:refseq;acc:nm_033060]	1079.37	High confidence	1225.09	1.135	
248	zinc finger protein 264. [source:swissprot;acc:o43296]	1969.15	Low confidence	2352.12	1.19448	
249	keratin associated protein 4-14; keratin associated protein 4.14. [source:refseq;acc:nm_033059]	1079.37	High confidence	1225.08	1.135	
249	zinc finger protein 228. [source:swissprot;acc:q9uju3]	1969.25	Low confidence	2352.23	1.19448	
250	keratin associated protein 4.9 (fragment). [source:sptrembl;acc:q9byq8]	1079.37	High confidence	1225.08	1.135	
250	zinc finger protein 224. [source:swissprot;acc:q9nzl3]	1969.49	Low confidence	2352.49	1.19447	

Legend:
- Rank is the rank after comparing the two networks
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/