MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Rank	Value Type	Gene	green	Interaction Map	Network Comparison Type	Filtered	network_comparison	red

Results: HTML CSV LaTeX

Showing element 401 to 450 of 66312 in total

Filtered  : 1

description	Rank	Value Type	green	Interaction Map	Network Comparison Type	network_comparison	red
26s protease regulatory subunit 4 (p26s4). [swissprot;acc:q03527]	2386	Rooted	75.2485	Low confidence	Subtracted	2.4474	72.8011
	2496				Divided	1.03362
	2497	Ranked	216.137	High confidence	Subtracted	0.556	215.581
	2503				Divided	1.00258
	2962		196.692	Low confidence		1.0169	200.017
	2968				Subtracted	3.325
	4226	Squared	45383.5			1102.5	46486
	4304				Divided	1.02429
26s protease regulatory subunit 6a (tat-binding protein 1) (tbp-1) (proteasome subunit p50). [swissprot;acc:p17980]	1181		30410	High confidence	Subtracted	3114.2	27295.8
	1496				Divided	1.11409
	1511	Measured	6362.33		Subtracted	435.57	5926.76
	1527				Divided	1.07349
	1841		8372.5	Low confidence	Subtracted	261.01	8111.49
	1916	Rooted	64.4831	High confidence	Divided	1.02878	62.679
	1949				Subtracted	1.8041
	2003	Measured	8372.5	Low confidence	Divided	1.03218	8111.49
	2219	Rooted	75.0673		Subtracted	2.484	72.5833
	2293				Divided	1.03422
	2466	Ranked	217.285	High confidence	Subtracted	0.645	216.64
	2474				Divided	1.00298
	2595		196.948	Low confidence		1.01795	200.484
	2596				Subtracted	3.536
	3664	Squared	44725.2			1355.3	46080.5
	3788				Divided	1.0303
26s protease regulatory subunit 6b (mip224) (mb67 interacting protein) (tat-binding protein-7) (tbp-7). [swissprot;acc:p43686]	1060	Measured	8556.58		Subtracted	299.14	8257.44
	1203				Divided	1.03623
	1222	Squared	29299.3	High confidence	Subtracted	3022	26277.3
	1489				Divided	1.115
	1542	Rooted	75.8817	Low confidence	Subtracted	2.6307	73.251
	1567	Measured	6242.94	High confidence	Divided	1.07226	5822.25
	1628				Subtracted	420.69
	1667	Rooted	75.8817	Low confidence	Divided	1.03591	73.251
	1991	Ranked	195.763			1.01951	199.582
	2043	Rooted	63.9055	High confidence	Subtracted	1.6713	62.2342
	2044	Ranked	195.763	Low confidence		3.819	199.582
		Rooted	63.9055	High confidence	Divided	1.02686	62.2342
	2323	Ranked	218.426		Subtracted	1.013	217.413
	2327				Divided	1.00466
	4581	Squared	46205.5	Low confidence	Subtracted	818.8	47024.3
	4609				Divided	1.01772
26s protease regulatory subunit 7 (mss1 protein). [swissprot;acc:p35998]	877	Measured	8703.92		Subtracted	318.16	8385.76
	1024				Divided	1.03794
	1224	Squared	29163.8	High confidence	Subtracted	3021.2	26142.6
	1481				Divided	1.11557
	1539	Measured	6207.5			1.07322	5783.97
	1578	Rooted	76.5062	Low confidence	Subtracted	2.6189	73.8873
	1622	Measured	6207.5	High confidence		423.53	5783.97
	1844	Rooted	76.5062	Low confidence	Divided	1.03544	73.8873
	1979		63.6738	High confidence		1.02776	61.9542
	2006				Subtracted	1.7196

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.